Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0783 ATGGAAGGTGATGAGGGAAAACAGTGCTCCCAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTCGATTTTATTCTAGCATTGAGCATGCAGGAACACGAGAGAGAGTTCACAATGCTTTCAACCATTGAAAGTGAAAGTGATGAATATCTGAGTGATCCTGACTTCGTAGAGAGTCATGAGTTTAACTCTGATCTTCAGTTTCTTGAAGATGAAGAAAGCAATGATAACGATGATGATGATGAAGAAGAAGAAATGGAAGAAGATGAGATTGATCCAGATGAATTATCTTATGAAGAGTTAATGGAGTTGGGAGAGTTTATAGGAGAAGAAACGAGAGGATTATCCGTAAATGAAATCTCTATATGCTTAAACCCTTATACTTGGCAACGTGATGAAACAAAAAGTGGAATCGATCGCTGTGTGATTTGTCAGGTTGAATATGAAGATAATGAAGCATTGGTGGCACTTCAATGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCCATTTGTAGCAATGAAGTTTCAACTCCAAACATGGCTTCCAACACTTAA 585 0.3812 MEGDEGKQCSQNPYVELEEVDFDFILALSMQEHEREFTMLSTIESESDEYLSDPDFVESHEFNSDLQFLEDEESNDNDDDDEEEEMEEDEIDPDELSYEELMELGEFIGEETRGLSVNEISICLNPYTWQRDETKSGIDRCVICQVEYEDNEALVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNMASNT* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0783 194 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 190 - -
Vra5g0783 194 MobiDBLite consensus disorder prediction 68 94 - -
Vra5g0783 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 194 IPR013083 -
Vra5g0783 194 Pfam Ring finger domain 140 181 IPR001841 -
Vra5g0783 194 SMART ring_2 141 181 IPR001841 -
Vra5g0783 194 MobiDBLite consensus disorder prediction 61 94 - -
Vra5g0783 194 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Vra5g0783 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 190 IPR045191 GO:0061630
Vra5g0783 194 SUPERFAMILY RING/U-box 140 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0783 Vra-Chr5 13427713 13429437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0783 79 185 C3H Transcription Factor Family AT3G63530 46.789 1.31e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0783 K19045 - gmx:100526881 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0783 5 13427713 13429437 Vra6g1378 6 27124806 27125785 PCT