Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0782 ATGGCATCGGAGCTTCAATTGCCTCCAGGCTTCAGATTCCATCCAACGGACGAGGAGCTCGTCATGCACTATCTCTGCCGCAAATGCGCCTCGCAGCCCATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCTTGGGACCTTCCTGGATTGGCTTCTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACCGGAAGTACCCAAACGGTTCGAGGCCGAACCGGGCGGCGGGAACCGGTTACTGGAAGGCAACCGGGGCGGATAAGCCCATTGGTCACCCGAAAGCGGTTGGGATCAAGAAAGCTTTGGTGTTTTACGCTGGGAAAGCTCCGAAAGGGGACAAAAGCAATTGGATCATGCACGAGTATCGTCTGGCTGATGTAGATCGATCCGTTCGCAAAAAGAACAGCCTAAGGTTGGATGATTGGGTGCTGTGCCGTATCTACAACAAGAAGGGCACGATCGAGAAATTACAACCGAGCAGTGATCCAGTTCTGACCCGGAGAATCGAATCCCCGGAGATCGAAGAGAAGAAGCCGGAGATTCTGAAAAGCGGAGGAGTTCTTCCGCCGGCGCCGGCGATGACGGACTACATGTACTTCGATCCGTCGGATTCAATCCCGAAGCTGCACACGGACTCGAGCTGTTCAGAGCAGGTGGTTTCGCCGGAATTCGCGAGCGAGGTGCAGAGCGAGCCGAAGTGGAACGAGTGGGAGAAGAGCCTGGAGTTTCCATTCTACATGGATACCACTCTGAGCAACGGCTTCACCCAATTCGCGAGCAATAACAATAACACCAATAATAATAATAATAATAATCAGATGTCACCGCTGCAGGACATGTTCATGTACTGGCCCAAGCCCTTTTGA 888 0.5282 MASELQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKAVGIKKALVFYAGKAPKGDKSNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGTIEKLQPSSDPVLTRRIESPEIEEKKPEILKSGGVLPPAPAMTDYMYFDPSDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWEKSLEFPFYMDTTLSNGFTQFASNNNNTNNNNNNNQMSPLQDMFMYWPKPF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0782 295 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Vra5g0782 295 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Vra5g0782 295 PANTHER NAC TRANSCRIPTION FACTOR 56 2 262 - -
Vra5g0782 295 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vra5g0782 295 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Vra5g0782 295 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 2 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0782 Vra-Chr5 13400240 13402417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0782 1 295 NAC Transcription Factor Family AT1G01720 70.588 2.57e-147 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra5g0782 NAM 5.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0782 - - gmx:100805768 513.457