Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0781 ATGACGACCCATCCCATGGAAATCGACAGCGAAAGCGATGACCAGACAAACTCCGCCGGTGAAAATGACATACTTGCCGCAGACCTTACTTCCCTCGGCAAGGCCATTCCGTGGGTTGAAAAATACCGCCCTCAGTCTCTCGACGACGTCGCCGCTCACCGTGACATTGTTGATACCATTGATAGGCTAACTACAGAGAACAGATTGCCGCATCTTTTATTGTATGGTCCTCCTGGAACGGGCAAAACATCAACCATTCTCGCTGTGGCACGCAAACTATATGGTCCACGCTTCCAAAATATGATTTTAGAGCTCAATGCATCAGATGACAGAGGAATTGAGGTCGTGAGGCAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTTAAGTCCTCTGTAAAGCTCGTATTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACCAGGTTTGCTCTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGGTTTCGATTTGCCCCTCTTGACGCTGTCCATGTCACTGAAAGACTGAAACACGTTATTAAGGCTGAAGGGCTTGATGTTGAAGACGATGGCTTAGCAGCCCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTAAATATTCTTCAGTCAACACATATGGCTACTCACCAGATAACAGAAGAAGATGTTTACCTGTGCACTGGAAATCCATTGCCCAAAGATATTGAGCAAATATCTTACTGGCTTCTAAACGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAGATGAAGACCAGGAAAGGGTTGGCCCTGGTTGATATTATCAGAGAAGTGATCATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAATTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTCATTGCTTCTTTTACACGCGCTAGATCTGCACTGGTAGCTGCTGCCTCATAG 1080 0.4352 MTTHPMEIDSESDDQTNSAGENDILAADLTSLGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGPRFQNMILELNASDDRGIEVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDDGLAALVRLSNGDMRKALNILQSTHMATHQITEEDVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIIREVIMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0781 359 PANTHER REPLICATION FACTOR C SUBUNIT 5 32 355 - -
Vra5g0781 359 Pfam Replication factor C C-terminal domain 260 346 IPR013748 -
Vra5g0781 359 CDD AAA 56 194 - -
Vra5g0781 359 Pfam ATPase family associated with various cellular activities (AAA) 72 192 IPR003959 GO:0005524|GO:0016887
Vra5g0781 359 SUPERFAMILY post-AAA+ oligomerization domain-like 260 350 IPR008921 GO:0003677|GO:0006260
Vra5g0781 359 Gene3D - 198 259 - -
Vra5g0781 359 CDD HLD_clamp_RFC 195 257 - -
Vra5g0781 359 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 32 355 - -
Vra5g0781 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 254 IPR027417 -
Vra5g0781 359 Gene3D - 260 357 - -
Vra5g0781 359 SMART AAA_5 68 198 IPR003593 -
Vra5g0781 359 Gene3D - 31 194 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0781 Vra-Chr5 13389508 13396414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0781 34 358 Core DNA Replication Machinery Family AT1G77470 82.583 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0781 K10756 - gmx:100782652 631.713