Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0763 ATGGCTAGCTTCATGCAACAGCAACCAAAGGGAGTTAATGGAGGCAGTAACCGCATAGTCGCAGTCAATGTCTCTCCCTCTAACAACCTTCCTACACCTTCAAATCATGAGAAGCCTGGGTGGAAAAAGTTCATGTCATATGTGGGTCCTGGCTTTCTGGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTGATCACAAATATGAGCTGCTGTGGGTAATACTGATTGGACTGGTGTTTGCGCTTATAATTCAATCGTTGGCTGCGAATCTGGGCGTAACCACTGGAAAACACCTTTCAGAATTATGTAAAGCCGAATATCCATTATTGGTAAAGTACTGTTTGTGGATATTAGCTGAGCTCGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTCGCGTTGAACATACTATTCCACATCCCTGTATGGGCAGGAGTTCTCATAACTGGCTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTGGAACTGCTGATATCAGTGCTAGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTACGTAAAACCACCTGCTTCTGGTGTATTGAAAGGAATGTTTGTGCCAAAACTCAGTGGTCAGGGAGCTACAGGGGATGCTATTGCTCTTTTGGGAGCCCTTGTCATGCCGCACAACCTTTTCCTCCACTCTGCTCTGGTCCTGTCTAGAAAAGTACCCAGTTCAGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGATTTGCATTGTTTGTGGCATTCCTAATCAATGTTGCAATGGTTTCTGTGTCGGGAACTGTTTGCGCTGCTGACAATCTTTCTGCAGCAAGTGCTGATCAGTGCAGCGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAACGTGTTGGGACGGTCGAGCTCTACCATTTATGCTATAGCACTGCTAGCCTCAGGACAAAGTTCAGCCATCACTGGAACCTATGCAGGGCAATACATTATGCAGGGTTTCTTGGACATGAGGATGAAAACATGGATTAGAAACTTTATGACTAGATGCATTGCCATAACACCTAGTCTTATTGTTTCAATCATTGGAGGTTCTCAAGGAGCTGGTCGGCTTATCATCATTGCATCGATGATACTTTCATTTGAGCTTCCATTCGCTTTGATTCCTCTGCTTAAGTTCAGCAGCAGCAGTACAAAGATGGGACCTCACAAGAATTCTATAATTATAATTGTGATCTCATGGATTCTGGGCTTGGGAATCATTGGCATCAATGTATACTACCTTTCTACTGCGTTCGTGGGTTGGTTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTGATTGGGATTGTAGTGTTTCCTCTAATGGCACTTTATGTTGGGTCAGTAATATACCTAACATTAAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGAAGCAGCAATGGAAAAGGGTCAATCAGAGTTGAATGAAATTCCTTACAGAGAAGACTTGGCTGATATCCCCTTACCACCATAA 1590 0.4352 MASFMQQQPKGVNGGSNRIVAVNVSPSNNLPTPSNHEKPGWKKFMSYVGPGFLVSLAYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLLVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWAGVLITGCSTLLFLGLQRFGVRKLELLISVLVFVMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINVAMVSVSGTVCAADNLSAASADQCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDMRMKTWIRNFMTRCIAITPSLIVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIIVISWILGLGIIGINVYYLSTAFVGWLIHSSLPKVANVLIGIVVFPLMALYVGSVIYLTLRKDTVKTYIETKNEAAMEKGQSELNEIPYREDLADIPLPP* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0763 529 PRINTS Natural resistance-associated macrophage protein signature 123 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PRINTS Natural resistance-associated macrophage protein signature 151 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PRINTS Natural resistance-associated macrophage protein signature 176 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PRINTS Natural resistance-associated macrophage protein signature 226 249 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PRINTS Natural resistance-associated macrophage protein signature 336 355 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PRINTS Natural resistance-associated macrophage protein signature 364 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PRINTS Natural resistance-associated macrophage protein signature 396 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 528 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 Pfam Natural resistance-associated macrophage protein 65 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 Hamap Divalent metal cation transporter MntH [mntH]. 31 452 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vra5g0763 529 PANTHER METAL TRANSPORTER NRAMP5 34 528 - -
Vra5g0763 529 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 42 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0763 Vra-Chr5 13016607 13021275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0763 15 528 Inorganic Solute Cotransporters AT1G15960 61.197 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0763 K21398 - gmx:100787785 946.806