Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0760 ATGACCACACAGAATCGTCGTTCGTCGTTTTCCTCCTCGACGACGTCGTCTTTGGCGAAGCGCCATGCATCCACCACCTCTTCCTCCTCTTTAACGGCTCCTACAAACGTGCCAAAGAAGCGTCCACCTCTCTCTAACCTCACCAACACCGTCGCTCACCGCAACTCTTCCTCTTCGGTCCCGTGCGCAGCTAAACTCGCGAAGACGAAGAAAGAGGTTGTTGTTCCGCCCTTCTCAGGCAACAAAAGGCCCACGCTGCCGAATGTCAAACCTACTAATGCAGTTGTTTTTCCCAAGGCTAATTCTCTCCCTCCGAGGAATGAAGCTCCTCCTCCTCCTCCACTTGTTGTCACTGTTACTGTTCCCCCTCCGGTGCTCGATGCTTCACCTTGTAAATCAGATGCAATGTCGGTTTCCATGGATGAGTCGATGTCTTCTTGTGATTCGTTCAAGAGTCCTGACATTGAATATGTGGACAATAGTGATGTGGCGGCTGTTGATTCAATTGAGAGGAAGACGTTCAGCAATCTCAACATATCTGATTCTACCGAATCAGGCAACATTTGTAGTAGAGACATACTTGTTGAGTTGGAAAAAGGGGACAAGTTTGTCAATGTTGATAACAATTTCGCTGATCCTCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAACCCCAGCATGCGTGCAATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTAGTACCCGATACATTGTATTTGACGGTAAACTACATTGATCGTTATCTTTCAGGAAATGTGATGAACAGACAAAGGCTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATTACTGATAACACGTACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCTTAAATTTTCTCAAGTTCGAAATGACAGCCCCAACGGTAAAATGTTTCTTAAGATTTGTACGTGCAGCTCAAGGAGTCGACGAGGTCGCTTCGCTGCAACTTGAGTGCTTGACAAACTATATTGCGGAATTGTCTCTATTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCTGCAATTTTTCTGGCCAAATTTATACTTTTCCCTTCAACGAAACCATGGAATTCCACATTGCAGCATTACACGCTCTACCAGGCTTCTGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTATGTGGTAACAGCTCTAACTCAAATTTGCCAGCAATCAGGGAGAAATATAGCCAGCACAAGTACAAATATGTGGCTAAGAAGTACTGCCCTCCTTCAATACCCCCAGAATTTTTCCTGAGTTGA 1452 0.4525 MTTQNRRSSFSSSTTSSLAKRHASTTSSSSLTAPTNVPKKRPPLSNLTNTVAHRNSSSSVPCAAKLAKTKKEVVVPPFSGNKRPTLPNVKPTNAVVFPKANSLPPRNEAPPPPPLVVTVTVPPPVLDASPCKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSTESGNICSRDILVELEKGDKFVNVDNNFADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRFVRAAQGVDEVASLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSTKPWNSTLQHYTLYQASDLCVCVKDLHRLCGNSSNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFLS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0760 483 Pfam Cyclin, N-terminal domain 222 348 IPR006671 -
Vra5g0760 483 Gene3D - 236 349 - -
Vra5g0760 483 CDD CYCLIN 252 341 IPR013763 -
Vra5g0760 483 Pfam Cyclin, C-terminal domain 351 469 IPR004367 -
Vra5g0760 483 SUPERFAMILY Cyclin-like 212 348 IPR036915 -
Vra5g0760 483 Gene3D - 222 469 - -
Vra5g0760 483 CDD CYCLIN 349 441 IPR013763 -
Vra5g0760 483 PANTHER CYCLIN-A1-1 29 481 - -
Vra5g0760 483 ProSitePatterns Cyclins signature. 253 284 IPR006671 -
Vra5g0760 483 PANTHER CYCLINS 29 481 IPR039361 -
Vra5g0760 483 SMART Cyclin_C_2 351 473 IPR004367 -
Vra5g0760 483 PIRSF Cyclin_A_B_D_E 1 478 IPR039361 -
Vra5g0760 483 SMART cyclin_7 258 342 IPR013763 -
Vra5g0760 483 SMART cyclin_7 358 442 IPR013763 -
Vra5g0760 483 MobiDBLite consensus disorder prediction 1 63 - -
Vra5g0760 483 SUPERFAMILY Cyclin-like 351 475 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0760 Vra-Chr5 12973508 12978159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0760 4 481 Core Cell Cycle Gene Families AT1G44110 62.190 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0760 K06627 - gmx:100789565 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1387 6 27251044 27255211 Vra5g0760 5 12973508 12978159 PCT