LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0754	ATGAGTGTCCATTTAAATCTGCTACTTATTGTGCGCCTGATTGCAGCGGTAGCAGCAGCTAAAACTCAATATATGTCAAAGCCAAACTGCGAATCAAAGTGTGGCAACGTTACCATTCCCTTTCCCTTTGGCCTCACAGAGGCCTGTTCTCTCAACACCTCATTTATCATCACTTGCGACAAAAGCCTTCCATTCTTGAATACTACTCATGAAATGCGGCTCTTCAATACTACTGATGATGAAAAGGTGCAGGTGCTGGACATCTCACTCGACGGCCAACTGCACGTTTCATTGCCAATTGTCACAAGTTGCGTCACTCCTAAATCAGAACACAATTATATTTCAATCAGCTTATACGCACCTTTTCACCTATCATCCAAGCAAAACAAGTTAACTGTATTGGGCGCTTACACTTTAGGAATAGTATCTGATGAATATTCAACATATGCTCTATCTGATGGATATTTAACATACGCTCGCACTTATTGCATGTCCTTCTACAGCATCATTTACAACATCAGCATTTACAACAGCAGCATTTACAACATGACACATGACGAGTCATGCTCCGGCAGTTTCTGTTGCGAGACTCCAATTCAACATAGGCTATCCAAATTCCACTATACATGTGTTGCAAATATCTTCGACTATAACTCAACCCAGGAGCCATTTCAGTCCTATCCATGTGGTTATACATTTTTGGTTAAGGAGGGAGCCTACAATTTCTCCATGACAGATATAAAAAATTTTAACACAAAAAACACGTTCCCTGTGGTTGTGGATTGGGCAGTGGGAAACACGTGCCTAGAAGCTCAGAAGAATGCTTCAAGCTATGCGTGTAAGTCAAATTACAGTGAATGTCAAGATGCAACGGTGGGACCTGGTTACCATTGTAAATGCTCCACTGGTTTTCGGGGAAATCCTTACCTATCTGATGGTTGTCAAGATGTTGATGAATGTGCTGAGGAATCCCACGACTGTTTAAAGGGGATATCAACATGCAGTAACAGTCCAGAAGGGAGCTACAGTTGTTCTTGTCTAAAGGGCTATGAAGGAGATGGAAAAAATAATGGAAGCGGATGTGTTATCAGGAGTAACCGCAAAATCGTAATTGCTTTAAGTGTGACTGGAAGTATATTGGCACTTGTGGGGGGAACCTTATACGTGTATTGCGCATTAAAGAAAAGAAAATCCAACAGACTTAAAGAACATTTTTTTCAACTAAACGGTGGCCTGTTATTACAACAAGAGATAAGCAGGTACACTGGATCAAATGAATTGACAAAAATCTTTACTGTGGAAGAACTAAAAGAGGCCACCAACAATTTCAATAAAGAGATGGTCTTAGGCGAAGGTGGGGAGGGAACAGTTTACAAAGGAATATTGCGTGACAATAGAATTGTAGCAATAAAAAAGTCCAGAATTAGTAACCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAATCATAGAAATGTGGTGAAACTCTTGGGATGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTCATTCCCAATGGAACTGTTTACGAGCATCTCCATGATCAAAGCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTGCTGGTGCCTTGTCATACTTACATTCTGCTACCCATGCACCAATCGTACATAGAGATGTGAAAACTTCAAACGTACTACTTGATCACAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCAAAGATTATTCCTCTTGATCGAACTCAGTTAACAACCTTGGTGTTGGGGACATTGGGGTATCTTGACCCAGAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTTTATAGTTTTGGAGTTGTCCTAGCTGAACTACTAACAGGAGAGAAGGCACTCTCTTTTGAAAGGCCAGAGGCTCATAGAAACCTAGCTATTCACTTCCATTCTTCAATGAAGGAGGATCGATTACTTGACATTGTCGATGGCCGCATAATAGATGAGACAAATGTTGAGCAAGTAATGGATGTTGCAAATATTGCAAGCCATTGTTTAAGGTTGAAAGGGGAGGAAAGGCCTACCATGAGAGAAGTGGCAATGGAACTTGAAGGAATCTACATTGTGGAGAAGCGCCAGTGGGAAAAAGTCAACTTGTCATCGGAGGAGACTGAAACTCTTCTCAAAGCAACACCATCATCTTCTTTTAGTGTAGATGGTGTTAACAGAAGAAGCGTGAATTCTAGCTCTGATATTTTAAACCGAATTTCCTTCTCCTTAACTAGTGGAAGGTGA	2325	0.4039	MSVHLNLLLIVRLIAAVAAAKTQYMSKPNCESKCGNVTIPFPFGLTEACSLNTSFIITCDKSLPFLNTTHEMRLFNTTDDEKVQVLDISLDGQLHVSLPIVTSCVTPKSEHNYISISLYAPFHLSSKQNKLTVLGAYTLGIVSDEYSTYALSDGYLTYARTYCMSFYSIIYNISIYNSSIYNMTHDESCSGSFCCETPIQHRLSKFHYTCVANIFDYNSTQEPFQSYPCGYTFLVKEGAYNFSMTDIKNFNTKNTFPVVVDWAVGNTCLEAQKNASSYACKSNYSECQDATVGPGYHCKCSTGFRGNPYLSDGCQDVDECAEESHDCLKGISTCSNSPEGSYSCSCLKGYEGDGKNNGSGCVIRSNRKIVIALSVTGSILALVGGTLYVYCALKKRKSNRLKEHFFQLNGGLLLQQEISRYTGSNELTKIFTVEELKEATNNFNKEMVLGEGGEGTVYKGILRDNRIVAIKKSRISNPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFIPNGTVYEHLHDQSKSLRLTWKRRLQIAVETAGALSYLHSATHAPIVHRDVKTSNVLLDHNLTAKVSDFGASKIIPLDRTQLTTLVLGTLGYLDPEYFHSSQLTEKSDVYSFGVVLAELLTGEKALSFERPEAHRNLAIHFHSSMKEDRLLDIVDGRIIDETNVEQVMDVANIASHCLRLKGEERPTMREVAMELEGIYIVEKRQWEKVNLSSEETETLLKATPSSSFSVDGVNRRSVNSSSDILNRISFSLTSGR*	775

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g0754	774	Gene3D	Laminin	266	362	-	-
	Vra5g0754	774	ProSiteProfiles	Protein kinase domain profile.	443	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g0754	774	SUPERFAMILY	EGF/Laminin	314	361	-	-
	Vra5g0754	774	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED	13	752	-	-
	Vra5g0754	774	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	564	576	IPR008271	GO:0004672\|GO:0006468
	Vra5g0754	774	Pfam	Calcium-binding EGF domain	316	356	IPR001881	GO:0005509
	Vra5g0754	774	SMART	serkin_6	443	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra5g0754	774	Pfam	Protein tyrosine and serine/threonine kinase	446	713	IPR001245	GO:0004672\|GO:0006468
	Vra5g0754	774	Gene3D	Phosphorylase Kinase; domain 1	418	518	-	-
	Vra5g0754	774	Gene3D	Transferase(Phosphotransferase) domain 1	519	737	-	-
	Vra5g0754	774	SMART	egf_5	267	315	IPR000742	-
	Vra5g0754	774	SMART	egf_5	319	362	IPR000742	-
	Vra5g0754	774	SUPERFAMILY	Protein kinase-like (PK-like)	427	728	IPR011009	-
	Vra5g0754	774	SMART	egfca_6	316	362	IPR001881	GO:0005509
	Vra5g0754	774	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	13	752	IPR045274	GO:0007166
	Vra5g0754	774	CDD	EGF_CA	316	353	-	-
	Vra5g0754	774	Pfam	Wall-associated receptor kinase galacturonan-binding	30	93	IPR025287	GO:0030247
	Vra5g0754	774	ProSiteProfiles	EGF-like domain profile.	316	356	IPR000742	-
	Vra5g0754	774	CDD	STKc_IRAK	449	716	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g0754	Vra-Chr5	12873463	12876380	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g0754	1	724	Receptor kinase-like Gene Family	AT1G21230	42.799	0.0	567

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Vra5g0754		PK_Tyr_Ser-Thr	4e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0754	-		-	vun:114162142	1129.01