Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0746 ATGGGGAGGGGTAAGATTGAGATCAAAAGGATTGAGAACTCAAGCAACAGGCAAGTTACATATTCAAAGAGGAAGAACGGGATCCTTAAGAAGGCAAAGGAAATTAGTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGGTGCCTCTGGAAAGATGCACGAATACATCAGCCCCTCCACCACGCTGATTGACATCCTAGACAGATACCAAAGAGCCTCTGGGAAGACCCTCTGGGACGCCAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAAAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAAGGGGAAGACATTACGTCACTGAATTACAAAGAACTGATGGCTCTAGAGGATGCCCTTGAAAATGGCCTCAATGGTGTTCGTGAGAAAAAGGTGGAAGTGCACAGGATGTTCAAGAGAAATGGCAAGATTTTGGAGGAGCAAAATAAGGAACTCAATTTCCTTCTGCAACATTTGGCATTAGAAAGCGTGGGAAACATGCATGGACAGTGGATTTGA 543 0.4383 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDILDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLNGVREKKVEVHRMFKRNGKILEEQNKELNFLLQHLALESVGNMHGQWI* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0746 180 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Vra5g0746 180 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra5g0746 180 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra5g0746 180 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 171 - -
Vra5g0746 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra5g0746 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra5g0746 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra5g0746 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra5g0746 180 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vra5g0746 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 171 - -
Vra5g0746 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra5g0746 180 Coils Coil 77 111 - -
Vra5g0746 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra5g0746 180 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vra5g0746 180 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0746 Vra-Chr5 12728375 12731374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0746 1 143 MADS-box Gene Family AT5G20240 69.930 6.64e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra5g0746 K-box 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0746 K09264 - gmx:100795861 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0746 5 12728375 12731374 Vra5g0746 5 12728375 12731374 ECH
Vra6g1407 6 27688578 27692729 Vra5g0746 5 12728375 12731374 PCT