Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0745 ATGAGGTCCTGTGGGAGATCTGCTACCGTTAATGATCCCTCTGGAGGGTCTGTTATTGAGCAGCATTTGTACTCAGAGGTTGCGGAGCAGGTTGTTTCTGTGCAGGAGTCTTGTTTGGAAGTGGCCTGCAATGTTGTGGACTCTAATGCTGACCTCTCCACTGTGACCGATGGTTATGAGGGAGAGGACTTTGTGGGTTCTGCAAGGTGTATAGATGAGGGGTCTTGTGATGCTCTGGGTTTGGCAAGTGAATGTGAAAATGCTGATTTGTTGTCACTGGAGAAACCCGCTGAAGATGATTGCTTGAATTGTTTGGGGGTTTCTTATGGGGGCATTGAAGTTCCCTGTGCAAGCAGTGGCCCTGAGGGGAATTTTCAGGGTGAGGAAAACTTTGATTTGCGGTCGCGGCCCCTGACTACTGATGATTCACCGAGGCATTGTGCTCAACAGGATGGGCAGAAAGATGATAAGAGCCACGTGTCACCTGCAGCAGGAGATGAGTCCGTCGTGGGAGGCAAAATCGATGACACATGTCTTCTTGGTGATGTTTTCAATCATGTACTTGATTTCAGGGACTCTGAAATGTCTTTGGAATTAGAATCTGTAGCTGACTTGTTAGTTGATTGCAACCAGCAAAATGAGCAGCAGGAAATGATGAGAAATGCAGATTCCTTGTTCAATGTTGTGGAAAAATGTGATAATCTAATTGGGACAGAAGCTGATGCCTGCAGGCATATATCTCCTACTGTGGATATGGAAGTGCCATCTGGCGCATTATATGCAGATACCGAAGTAGATAGCACAAGTGACCCGAAAGATGGTTGCCAAGGGACTGTTGAGAGCTCATCTGTAGATTCTCCTTGTGAGCCTGCCTTGTTGGATCCAGGTTGTGAAATGAAGAATGATGTACTACAAATAGAAGATGCTTTCTGTAAATTGAAGGACTGTTCCTCAGAAGAAACTAGCAACTCTACCTTTAGAAAGCCGTTTTCTCCAGAATCAGGCCTGCCCTGGGTTGCTTCAATTGCCAACTGCTCTTCGAAGGATGTTTCTGATCTCCATTGTAAGGGGGATGATGTTTCTACTCCTACTGCTACCAATAATGCTGTGGACGATCCAGGGAAGATGGTTAATGATGGAAAAGAAGCACTTAATGTTGATTGTATCACTGAAAGCATTCCATTACTTTCTCAAAGGAGTAGTCGAAGAAGTAAAGTAGGCCGCAAGACACAGACCAAAAAGGCTTCAAGAAGAGGCAAAAACAAAACCAAGGTGACATGTCCTAATGGGGATTATATGAAGTTATATTCAGAGGCTGCTAGAAAGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTATCTGGGGATTGATTGGGAATATTGAACATTTTTTTGAGCACGATAGTGAGCACGCAGTTCGTGAAGCTGTATGTCAAGAATTTGGAAAGGCAAGAAGCAAGCGTCAAAGTGGGAAAGCAGTTAAGAATAATGCAAGTACTGGCTCATTGAGTTCAGTAAAGAAGTGTCCTGTTTCAACCACCCGTGTTCGTCTAAAGATCAAATTTGGTAAAGAACCTGATTTAAGTTGCTCAAATGTCTTGACTCCTGAGTCTGTTGATGGCTTGGCTTCTGCGTCCTACTTGGAGTCTGGTTCAGCTTCTCAGAAAATAGCCAGCAATCTCGAAGATAAAATGTTGAAAGTGGTGACATTGGGCAATACAGAATCTTTCAACAATAACGTGGATAAGGATGACCTTGTTCGAAATGGACAAGTGGCTAATAGCCCCATAGAAGGACATACTGAAATAACGGAGAAGGCAGATGGAGATGTAGAGGAGCATTGTCTTGCAGCTCCTCCAGAGAAGGTGATTGAGGCATTGATTGAACCTATCAACAACAAGGGTATGGATCCTGGAACTTCACCTGATTCAGAAGTGATCAATTCAATTCCCGAAGTCCATGTTGCAGAGAGACATGAAGAAGATTTACATGATGCTGTTTTAGGTTCTTCTAAAGAGTTAAATTCTAAAGTGGATGCCACTGTAAGTAAAAGAGGGAAGAAGAAAGACAAACTTATCAGTTCAGGTATTTGTATCACTGAAGATGAATCTCAAGGTCCACCTAGGAACCGTAGAGGGAAGCAGTCAAAGAACCGCAGGGGTAAGAAAAATTGTACGGGTGCAATTAGCTCTTTGGATTTGTCTACTCCAACTCAGATAAACAAATCTGTGAGCAGTAAACAATTGTGCCCGGAATCTTTGTCCCTTTCTGGAGAGACTGAACTTGGACGCACTGCTGAGGCTTTGAAAGTTAAAAATGACATGGACATTAATACAAGTTGCAAACCATCAGTTGACAATGGATTTTCAGAATCTCAGGTTTCTGAGAATATGCTGTCTTCTGCAAGGCCTTTGGGTCGTAAACTACCTAAAAGTCTTAGACCCAGTAAAGTTAGCAGGACCAAATTTAAAGCTTCTGACTCGGCTGACAGGAAAAAGACTACATGTACACGAAAGGAGAAACAGAAAAAGCCAATTGTTAAGTCTGAAGTCAAGAGAAAAGGTGCCTCTCTTAAAATTACATGTGAAATGGAAGATCGCCCACATGCAGAAGCAAATATTGGAAATCATAAACTGGATGCTATCAGAAAAATTAATGCCGAGGACAACAAAGTATCAGTCAACATATCTAGTTTGGACACGCTGTCTGGTGTTGGACTGGGTGGGCAACTTCCGTCTCCCCGTAATGCGTGGGTGCGATGCGATGATTGTTACAAATGGAGGCGAATTCCAGCTGTGCTTGCAGACCTAATTGATGAAACTAACCGTACCTGGACATGTAAGGACAGCAGTGATAGAGCTTTTGCTGACTGTGCTGTTCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCAGATGCCTCGGGTGACGAAGATGCATATGAAGGCTCCAAAAATTTTAAGGAATTAGAATATCGGCCTCCATTTGTTTCCCAGGGGTCAACTTTTACCCATATATTCACCAATGAATTCCTGCATCGTAGCCATAAAACTCAGACTATTGATGAGATAATGGTCTGTCATTGCAAGGCACCTCAAGAAGGAAAGTTCGGCTGTGGAGATGAATGCCTAAATCGGATGCTTAATATTGAATGTGCACAAGGAACATGCCCATGTGGGGACCGTTGTTCTAACCAGCAGTTCCAAAAACGCAAGTATGCTAGTCTGAGGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTGAAGGCACTTGGCAATGTTGCTAAAGGCCAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGATATGCAAACGTACGAGGCACGGCAAAGAGAATATGCTTTGAAGGGTCATCGACATTTCTATTTTATGACCTTGAATGGCAGTGAGGTAATAGATGCAAGTGCTAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAGATCTGTATTGGACTGTTTGCACTGAGGGATATTAAGCAGGATGAAGAATTGACATTTGACTACAACTATGTAAGGGTTTTTGGTGCTGCAGCAAAAAAATGTTATTGTGGTTCACCTAGTTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAACGCTGAACTGATAGTTCAAAGTGATTCAGAAGAGGAATTTCCAGAACCTGTTATGCTTACGAGAGATGGTAAAATTGAAGAGGCACCCAAGTATTGTAATAATGATGATACAGAATCTGCTAGAAATATGTTAAAAGGCAGGGATGTATTGGAAAAGTCTACAAGTGCTATAGATTCAGATGGTTCTCCAGAAAAAGAAAGTTCCATGAACCCTACCTCTGCTGTTTCTCTGTTGCAAAGCTCAGCAGAAATGGAGGATTCAAAGGGCAAGTTACCATCTGCCATTCGAGTTGAAGAAATTTCTCAACAAATGGAGGATGTAACAAGCAAACCCATGCCTGCCGTACAAGGATATGAAAAGGAAAAGGAATCAGAGTTTGCAGACAAAACTTCTCCCACTCAAAGATTAGAGACTACTTCTCCTCTTACAGCTTCCAGCAAAATATTAACTAATTCGACTGGTAGTAATAGGGAATCCAAGTCTGAAATAATTGAAGGCAAGAAGAATCCCAAGTTAAATGGTTCTGTTAAAAAGGGAAAGGTGCATACTAGTCCTCCAAATGGCCTTAAAGCCGAGGTGACAGCCAATAGATTGCAGTTGTCATCTGTCAAACATAAAAAGGTTGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAGGATGCTACCAAAGGGTACTTGAAGCTTTTGTTTCTTACTGTGGCATCCGGTGATAGAAGCAACGGTGAAGCAATTCAAAGTAATCGAGATCTTTCCATGATACTTGACGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAAATGTTACATAACATTATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCAATACTGCGAAAGCTTCTGAAGGTCTTGGAGTACCTAGCAGCAAGCAAGATTTTGACACCTGAACAGATTAATGGTGGTCCTCCGTGTCATGGGATGGAGAGCTTTAGAGAGTCAATGCTTTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGTTTCCCAGACCCAACAGAAAACATGGCTATTTGGACAGGGATGATAATAGAATGGAATCTCACAGAACTTTCAATGGTAACAGATTTTCAGCATCACACTGTCATAGACATGAACAGGATTTAAGGGCTGCAGAAGTAATTGACTGTAGTCAGCAGTCTATGCACGTGACAACTCCAGTAGATGCTGATACCCAGGAAAGCTGTCCTGCCCACTCTGTAGATGTGGTTGAAATCAAAGGACCTAAAAAACGGAAGCGCAAGAGCCGATGGGATCAACCGGGGGAGTCAAACTCACTTTCTGATGCTGTTATGAGCTCCGTTGGTGAAAGCCAGAACATTCATGAGGATGTTCCACCAGGGTTTTCGTGTCCATTAAATGCTTCTTCCCTAAACTCTGGCAATCTTGTATTGCAAAATGCAAGCCGTTCTGGATGTCCCTCTGATTTAGTAGTTGGTCATTCAAAAAGGAAATTTAATTCTCGCTTGCCTGTGGCTTATGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACACCTCATACTGAATTTCCAGAGCGCTGGGTCACTGCACCTGGCATACCTTTCGTTCCATTTCCTCCACTACCCCCATATCCTCGAGACAATAAAGACTCTCAACCTTCTAATAATTATATTGCTATGATAATCGATCAGCCTGCTGAAGCTATGACAAGGGATCACTCTGCTGAAGTCAAGGAGGGCGATAACAGTAGTATGGTCACTTGTTGCGCAGATGATATGATTCCCAGCACAACTAGTGCTAACCCTGAAGAGTCAAACCTTCTGTTTGAGGACAACGAAGCCAAACGAATGAAGGGTGACTCCCATGATTTGGTAACGAAGTACTATAGACAGCAGAAATGGAATAATTCAAAAATACATCGACCATGGTTCCGGAGGAATGCATGGAAATGTAATGAGAACAACTCTAATGGTGATATGTGCAGTATAGGTGTAGATGTACCAAAAGAGTCGGAAGATACTTGTGATGCGGAGGATGCAATCTGTAGAGAGGAGAAAGGTGGCAATAATATTTATTAG 5853 0.4254 MRSCGRSATVNDPSGGSVIEQHLYSEVAEQVVSVQESCLEVACNVVDSNADLSTVTDGYEGEDFVGSARCIDEGSCDALGLASECENADLLSLEKPAEDDCLNCLGVSYGGIEVPCASSGPEGNFQGEENFDLRSRPLTTDDSPRHCAQQDGQKDDKSHVSPAAGDESVVGGKIDDTCLLGDVFNHVLDFRDSEMSLELESVADLLVDCNQQNEQQEMMRNADSLFNVVEKCDNLIGTEADACRHISPTVDMEVPSGALYADTEVDSTSDPKDGCQGTVESSSVDSPCEPALLDPGCEMKNDVLQIEDAFCKLKDCSSEETSNSTFRKPFSPESGLPWVASIANCSSKDVSDLHCKGDDVSTPTATNNAVDDPGKMVNDGKEALNVDCITESIPLLSQRSSRRSKVGRKTQTKKASRRGKNKTKVTCPNGDYMKLYSEAARKKRSCFSKPARSSIWGLIGNIEHFFEHDSEHAVREAVCQEFGKARSKRQSGKAVKNNASTGSLSSVKKCPVSTTRVRLKIKFGKEPDLSCSNVLTPESVDGLASASYLESGSASQKIASNLEDKMLKVVTLGNTESFNNNVDKDDLVRNGQVANSPIEGHTEITEKADGDVEEHCLAAPPEKVIEALIEPINNKGMDPGTSPDSEVINSIPEVHVAERHEEDLHDAVLGSSKELNSKVDATVSKRGKKKDKLISSGICITEDESQGPPRNRRGKQSKNRRGKKNCTGAISSLDLSTPTQINKSVSSKQLCPESLSLSGETELGRTAEALKVKNDMDINTSCKPSVDNGFSESQVSENMLSSARPLGRKLPKSLRPSKVSRTKFKASDSADRKKTTCTRKEKQKKPIVKSEVKRKGASLKITCEMEDRPHAEANIGNHKLDAIRKINAEDNKVSVNISSLDTLSGVGLGGQLPSPRNAWVRCDDCYKWRRIPAVLADLIDETNRTWTCKDSSDRAFADCAVPQEKSNAEINAELGLSDASGDEDAYEGSKNFKELEYRPPFVSQGSTFTHIFTNEFLHRSHKTQTIDEIMVCHCKAPQEGKFGCGDECLNRMLNIECAQGTCPCGDRCSNQQFQKRKYASLRWFKCGKKGYGLKALGNVAKGQFLIEYVGEVLDMQTYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPSCRGYIGGGDPLNAELIVQSDSEEEFPEPVMLTRDGKIEEAPKYCNNDDTESARNMLKGRDVLEKSTSAIDSDGSPEKESSMNPTSAVSLLQSSAEMEDSKGKLPSAIRVEEISQQMEDVTSKPMPAVQGYEKEKESEFADKTSPTQRLETTSPLTASSKILTNSTGSNRESKSEIIEGKKNPKLNGSVKKGKVHTSPPNGLKAEVTANRLQLSSVKHKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAASKILTPEQINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWFPRPNRKHGYLDRDDNRMESHRTFNGNRFSASHCHRHEQDLRAAEVIDCSQQSMHVTTPVDADTQESCPAHSVDVVEIKGPKKRKRKSRWDQPGESNSLSDAVMSSVGESQNIHEDVPPGFSCPLNASSLNSGNLVLQNASRSGCPSDLVVGHSKRKFNSRLPVAYGMPWSVAQQYGTPHTEFPERWVTAPGIPFVPFPPLPPYPRDNKDSQPSNNYIAMIIDQPAEAMTRDHSAEVKEGDNSSMVTCCADDMIPSTTSANPEESNLLFEDNEAKRMKGDSHDLVTKYYRQQKWNNSKIHRPWFRRNAWKCNENNSNGDMCSIGVDVPKESEDTCDAEDAICREEKGGNNIY* 1951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0745 1950 MobiDBLite consensus disorder prediction 398 424 - -
Vra5g0745 1950 Pfam SET domain 1090 1196 IPR001214 GO:0005515
Vra5g0745 1950 CDD SET_SETD2 1078 1220 IPR044437 GO:0010452|GO:0046975
Vra5g0745 1950 MobiDBLite consensus disorder prediction 263 287 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1281 1309 - -
Vra5g0745 1950 ProSiteProfiles Post-SET domain profile. 1204 1220 IPR003616 -
Vra5g0745 1950 SMART set_7 1079 1202 IPR001214 GO:0005515
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1240 1280 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 402 421 - -
Vra5g0745 1950 Pfam AWS domain 1042 1076 IPR006560 GO:0005634|GO:0018024
Vra5g0745 1950 SUPERFAMILY SET domain 1007 1217 IPR046341 -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1675 1713 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1357 1385 - -
Vra5g0745 1950 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 393 1866 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 821 847 - -
Vra5g0745 1950 SMART PostSET_3 1204 1220 IPR003616 -
Vra5g0745 1950 Pfam CW-type Zinc Finger 919 965 IPR011124 GO:0008270
Vra5g0745 1950 Gene3D SET domain 977 1229 IPR046341 -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1234 1317 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1691 1710 - -
Vra5g0745 1950 ProSiteProfiles Zinc finger CW-type profile. 913 967 IPR011124 GO:0008270
Vra5g0745 1950 Gene3D - 911 972 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 134 162 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 800 847 - -
Vra5g0745 1950 SMART shorttest3 1027 1078 IPR006560 GO:0005634|GO:0018024
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1342 1356 - -
Vra5g0745 1950 ProSiteProfiles AWS domain profile. 1027 1077 IPR006560 GO:0005634|GO:0018024
Vra5g0745 1950 MobiDBLite consensus disorder prediction 699 735 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 1329 1416 - -
Vra5g0745 1950 PANTHER SET DOMAIN PROTEINS 393 1866 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 270 285 - -
Vra5g0745 1950 MobiDBLite consensus disorder prediction 134 168 - -
Vra5g0745 1950 ProSiteProfiles SET domain profile. 1079 1196 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0745 Vra-Chr5 12695364 12710752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0745 1062 1219 C2H2 Transcription Factor Family AT2G23740 33.143 1.40e-19 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra5g0745 SET 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0745 - - gmx:100795379 2848.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0745 5 12695364 12710752 Vra5g0745 5 12695364 12710752 ECH