Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0743 ATGCCTCAAACGGCTCCTACCGGAGAACCCTCCCATGGAGGCTCCGGTGGCCGCAAGGTGGTGGTGGGGGTGAAGATGGATTCCCCCAGCAAGGAATTGCTCACGTGGGCTTTGGTCAAAGTGGCTCACCCTGGTGACACCGTGGTTGCTCTGCATGTTCTTGGGAACCAGGAAGCTGTGAATGGAGACGGGAAATCTTCGCTGCTTTCACTTGTCAAGGCGTTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAACTTGAAACAGGTCGACCTCAAACTCAAAATATGCCGTGGTTCATCGGTGAAGAAAATTTTGGTTCGAGAAGCAAATGGTTATTCTGCAACTCATGTTGTGGTCGGAACAACTCATGGTCTGCATAGAATCCGGTCATCTACCTTTGTAGCTAAATACTGTGCTAAAAAGTTGTCCAAGGATTGCTGTATTCTCGCTGTTAACAATGGGAAAGTTGTGTTCAAGCGTGACAGCTCGCCACCGAGTGTTGCTGACTTACAAGGAATTGATCGTCAGCACAGAAATGGTTTGATCGGTTCGATTCATTGGACACTCAGTAAGAATACAAAAGTTCTAAGTGATGACAATTCAGGGACGGATGCTGATGAGAAGAAACCTGGCCAAAGTTCAGATCACAGTTTAGCCAAGGTTTTCCTAGATTCTGCAGAAACTGTTAGAAAACCGAACTGTTCAATTTGTGGCACAACCTTGGCATTGCCAGACCCTTCTTGCCACCAATCTGCAGAAGGGTTTTCTGGTGATGATGGTAAAGAGAATTCCTTGGCTATAGTACCAGTGCAAGTGCAACCCACTGTTGCTGCAGAAACGGAATTGAAACCTGGTTGGCCACTACTACACCGTAGAATTATATCGGACACACAATCTACTGATAGATCATTGATGCACCCCAAGATTTCCGTGGTCCAGTGGGCAATGAGGTTACCTTCTAGAAATATTTCATATGCTTCAGTTCGTGATGAAAAACCTGAAAGTTGTGATCAAAGTCTGGATCAACCTGCCGCTTTAGATAGGGAAAGTGGTGCTCTTGTTCCATTAGATTCTGAAATCGGAACAGCTTCTTCGCCAGAAAGCAATTCAAGAAACATTCCTAAAGAATTGGAGAGCCTTCACGAGAAGTACTCCTCAACTTGTAGATTGTTTGGGTACCAAGATCTTGTATCTGCCACATCAAATTTCTTACCGGAAAACTTTATTGGGAAAGGAGGAAGCAGTCAGGTTTTTAGAGGCTGCCTTTCTGATGGCAAGGAACTTGCTGTCAAGATTCTAAAGCCTTCTGAAGATGTATTGAAGGAATTTATTCTGGAAATCGAAATCATCACTACTTTGCATCACAAAAACATAATTTCCCTCCTGGGATTCTGCTTTGAGAATGGCAAATTTCTTCTGGTTTATGATCTCTTATCAAGGGGAAGTCTTGAAGAGAATCTTCATGGTAATAAGAAAAATTCACTTGCGTTTGGTTGGTCGGAGAGATATAAGGTAGCTGTGGGTATTGCTGAGGCTTTAGATTATCTGCATTCTAAAGATGATCAACCCGTGATCCATCGGGATGTAAAGTCATCAAATGTATTATTATCCGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCAAAATGGGCATCAACCTCGTCATCACACATAACCTGCACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCCGAATACTTCATGTACGGCAAAGTAAATGATAAGATTGATGTTTATGCATTTGGGGTGGTGCTCCTTGAACTTCTTTCGGGGAGAAGGCCCATAAACCGTGATTATCCTAAAGGCCAAGAGAGTCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCAAGTTTGGGTGATAAGTATGATCATGAGGAGATGGAAAAGATGGTGTTGGCAGCCACACTGTGTATCAAACGTGCTCCAAGGGCTAGGCCTCAAATGAAGCTTATCTTAAAGCTCCTTCAAGGTGACATTGAAACAATGAAGTGGGCAAGGTTAGAAGTTAAGAATGGTTTGGATGCAACAGAAACGGTTGATGATGAAGCGTGTCCACCTAGTGATAATCTGCAGTCACATATAGATCTTGCACTGCGTGATGTGGTGGAAGAGTCACTCTCCATGTGCAGTGTTGAGCAGGGTTTGACATTGGAGGACTACTTGAGAGGCCGTTGCAGCCGTGAATCAAGCTTTGACTGA 2262 0.4399 MPQTAPTGEPSHGGSGGRKVVVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNQEAVNGDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREANGYSATHVVVGTTHGLHRIRSSTFVAKYCAKKLSKDCCILAVNNGKVVFKRDSSPPSVADLQGIDRQHRNGLIGSIHWTLSKNTKVLSDDNSGTDADEKKPGQSSDHSLAKVFLDSAETVRKPNCSICGTTLALPDPSCHQSAEGFSGDDGKENSLAIVPVQVQPTVAAETELKPGWPLLHRRIISDTQSTDRSLMHPKISVVQWAMRLPSRNISYASVRDEKPESCDQSLDQPAALDRESGALVPLDSEIGTASSPESNSRNIPKELESLHEKYSSTCRLFGYQDLVSATSNFLPENFIGKGGSSQVFRGCLSDGKELAVKILKPSEDVLKEFILEIEIITTLHHKNIISLLGFCFENGKFLLVYDLLSRGSLEENLHGNKKNSLAFGWSERYKVAVGIAEALDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRRPINRDYPKGQESLVMWASPILNSGKVLQLLDPSLGDKYDHEEMEKMVLAATLCIKRAPRARPQMKLILKLLQGDIETMKWARLEVKNGLDATETVDDEACPPSDNLQSHIDLALRDVVEESLSMCSVEQGLTLEDYLRGRCSRESSFD* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0743 753 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 131 - -
Vra5g0743 753 Gene3D HUPs 17 154 IPR014729 -
Vra5g0743 753 MobiDBLite consensus disorder prediction 202 216 - -
Vra5g0743 753 Gene3D Phosphorylase Kinase; domain 1 366 479 - -
Vra5g0743 753 SUPERFAMILY Protein kinase-like (PK-like) 386 676 IPR011009 -
Vra5g0743 753 CDD USP_Like 19 153 - -
Vra5g0743 753 Pfam Protein kinase domain 409 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0743 753 ProSiteProfiles Protein kinase domain profile. 405 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0743 753 Pfam Universal stress protein family 18 148 IPR006016 -
Vra5g0743 753 SMART serkin_6 405 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0743 753 Gene3D Transferase(Phosphotransferase) domain 1 480 697 - -
Vra5g0743 753 MobiDBLite consensus disorder prediction 199 219 - -
Vra5g0743 753 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Vra5g0743 753 PANTHER - 11 733 - -
Vra5g0743 753 PANTHER OS08G0249100 PROTEIN 11 733 - -
Vra5g0743 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0743 Vra-Chr5 12668267 12672163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0743 393 680 Trihelix Transcription Factor Family AT1G70460 41.695 3.67e-71 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra5g0743 Pkinase 4.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0743 - - aprc:113846853 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0743 5 12668267 12672163 Vra5g0743 5 12668267 12672163 ECH