Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0739 ATGCTTCCGCGGCGGTGCACGGCGTCAGCGGCGGCGGGGCAGACGGGGAGCAGCGACAGCGACTTGGATGAGTTTATTATGCGGTGCCTCTCCTGCGAGGATCAATACGACATGATGGACTCCGGAACCTGCAGGGAGTGCTACCAAGAGGCCAACGAGGCCGAGGAGGAGCTCCGCCTCGAGATCGATGACCTCAAGTCCAAGGTCTCCTTCCTCACACTCTCCTCTCCCACTCTCAATCCTTCTACCGCCGATATCGTCCTCGTTCCCGTCGACGACTCCGACGCCACTCCCATTCCCGCTCACAAGCATGTTCTGGTTAGTCGCTCTCCTGTTTTCAATGCAATGCTTGAGAATGATATGGAGGAAAGGCGGAGTGGCACCATCAAGATTTCTGACGTATCACATGATACCCTCCGCGCTTTTGTTAACTACTTATACACTGCTGAAGCGCCCCTTGATAACCAAATGGCCTGTAACCTGTTGGTTTTGGGAGAAAAGTATCAAGTGAAGCATCTGAAGACATACTGTGAGAAGTATTTGATCGCCAAAATGAATTGGAATAGGGCTATTGCAAACTATGCCTTTGCATATCAATACAATTGCAAACAATTACGAAGTGCGTCCTTGGCAGTGATCTTGGACAAAATGGATTCGCTCACTCAAAATGAATATTATGCGGAGCTCGTGGACACCAATCCTCGTCTTGTTGTGGAAATATATGAAACATATATTGGCAAGCAATTAAACACCGCAGGCACCTGTTAG 768 0.4974 MLPRRCTASAAAGQTGSSDSDLDEFIMRCLSCEDQYDMMDSGTCRECYQEANEAEEELRLEIDDLKSKVSFLTLSSPTLNPSTADIVLVPVDDSDATPIPAHKHVLVSRSPVFNAMLENDMEERRSGTIKISDVSHDTLRAFVNYLYTAEAPLDNQMACNLLVLGEKYQVKHLKTYCEKYLIAKMNWNRAIANYAFAYQYNCKQLRSASLAVILDKMDSLTQNEYYAELVDTNPRLVVEIYETYIGKQLNTAGTC* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0739 255 SUPERFAMILY POZ domain 78 182 IPR011333 -
Vra5g0739 255 PANTHER SPECKLE-TYPE POZ PROTEIN 12 252 - -
Vra5g0739 255 PANTHER GH01369P 12 252 - -
Vra5g0739 255 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g0739 255 Gene3D - 187 254 - -
Vra5g0739 255 Gene3D Potassium Channel Kv1.1; Chain A 51 186 IPR011333 -
Vra5g0739 255 ProSiteProfiles BTB domain profile. 84 155 IPR000210 GO:0005515
Vra5g0739 255 SMART BTB_4 84 185 IPR000210 GO:0005515
Vra5g0739 255 Coils Coil 48 68 - -
Vra5g0739 255 Pfam BTB/POZ domain 81 183 IPR000210 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vra5g0739 BTB 2.3e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0739 K10523 - gmx:100794118 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0739 5 12592238 12594861 Vra5g0739 5 12592238 12594861 ECH