Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0738 ATGGATAGTGAGGTGACAATTGAAGATGATAATTGTGTTGCTGAAGAGGGAAAACATTTGAATAGTAAAGCCATGAATGATGAGGTTGCAATTGCTCATGCAAATGGTGTTGCTGGAGAGGTTAGGGTCTTGAAAAGTGAACCCTTTAGTAATGGGGTGGCAGTTGGAGATAAAGGTGTTTCTGGTGGAGTGGAATGTTTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAAGAGGCAAAACTCAGGAACAATGCAGACCAGGCATGTCAACTGCAAGTGGGATAGCGGATCAGGATGTGAAGAAACCATGTGATCTAGCTTTAGGAAATACATCAGATGATTGTTCCCAAGGACAGTGGGGAAATATTGTACTAAATCATTTATATCAGTCATTAGGTGAGGGCAATGGTGGTGTGGAGGGATGCATAAGGGAAGCACTTAATCCTAAACAAAACCTTGCCCCTACTGTTATGGAAACCTTTCTAATTGAAAAAAATGGTAAAAGATGCTCTTCGCAATCTGAGCTGCTTTCTCATAGAACAGGGAAGGAAGCTAATCGACATGCAGATGTCATGTGTAATGGATGTTCCAGTGAATTACCTGACCATGGTGTGACTGAGATGTGTCAACGTGTGCTCTGTAATATCTTAACCTCAGAAAAATTCCGCTCATTGTGTAAGGCTTTGCTTGAAAATTTCCAGGGAATCAAGCCTGAAAGTGTATTTGACTTTACCATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGGGAAAGCTTCAAGACACTGGTAACGAGATTGTTGCTCTTGCCAAGAGCCTATCAAGCATGTCAACAACTTCCTACTCAGAGCTGGTAGGAGTTTCGGCACCCAGCACATTTCAAGATGAGAAGCAGCCGTCCTGCAACCGAGAATTTGGCTTTCTCGTGAAACCAGAACAGACGCAAGACATTGCTATGTACAGAATCGGCAGTTGCAGTCGTTGTGGAGAGAAGGCAGATGACAAAGACTGTTTGGTTTGTGATTCATGTGAAGAGATATTCCATGTGTCCTGTATTGAGCCGTTAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAGGTGTACTGCTAATGGGATTGGATCTCCACATGAGCATTGTGTACTATGTGAAAGGTTAAATGATGAACAGACCCCAAATGGCATAATTGGCGATGAAAGCTTTCCTACAATTAAGGAAACAAAACATGAATTTGAAGAAAATTCAAATTGCACCTCTGATGGGATTGAAGTTTCTGTAGGTGAGAAAACAACACCCGTTTGCAAAATTTGCAGAAATGAAGTGGATGGTAAAAAGAGAAAAAAGGTGAAAATATGTGGCCATAAGTTTTGCTCCAACAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAGTTAAAGTCATACGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCGGTGTTTGCTTAATTGATCGAGATGATGATCAGATCGTTATCTGTGATGGCTGTGATCGTGGATATCACATATATTGCTTGACACCTCCACTGTCTTCTATTCCAAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGAGATACAAGCAATTCACAAGGCTAAAAAGGCGTATGAAAGTAACGAACCAAGCAGAAAAGGGAGAGATGCTGCTAAGCCAAATGCTAAACTTGATAAGAAACACAGAAATAAACGAGCAAGAGAAATGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATACTCTGAATTTTGAAGAGAAAAAGGCAGCACTCCAGATTGAGTCACAGACAACATGA 1878 0.4153 MDSEVTIEDDNCVAEEGKHLNSKAMNDEVAIAHANGVAGEVRVLKSEPFSNGVAVGDKGVSGGVECLRTYKRRKKSSSRGKTQEQCRPGMSTASGIADQDVKKPCDLALGNTSDDCSQGQWGNIVLNHLYQSLGEGNGGVEGCIREALNPKQNLAPTVMETFLIEKNGKRCSSQSELLSHRTGKEANRHADVMCNGCSSELPDHGVTEMCQRVLCNILTSEKFRSLCKALLENFQGIKPESVFDFTIMNSRMKEQAYEQSPALFLSDIQQVWGKLQDTGNEIVALAKSLSSMSTTSYSELVGVSAPSTFQDEKQPSCNREFGFLVKPEQTQDIAMYRIGSCSRCGEKADDKDCLVCDSCEEIFHVSCIEPLVKEIIPHKSWYCARCTANGIGSPHEHCVLCERLNDEQTPNGIIGDESFPTIKETKHEFEENSNCTSDGIEVSVGEKTTPVCKICRNEVDGKKRKKVKICGHKFCSNKYYHVRCLTKKQLKSYGHCWYCPSCLCGVCLIDRDDDQIVICDGCDRGYHIYCLTPPLSSIPSGKWFCRLCDAEIQAIHKAKKAYESNEPSRKGRDAAKPNAKLDKKHRNKRAREMERGGAMDMLLTAANTLNFEEKKAALQIESQTT* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0738 625 SUPERFAMILY FYVE/PHD zinc finger 335 388 IPR011011 -
Vra5g0738 625 SUPERFAMILY FYVE/PHD zinc finger 503 551 IPR011011 -
Vra5g0738 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 556 IPR013083 -
Vra5g0738 625 ProSiteProfiles Zinc finger PHD-type profile. 501 551 IPR019787 -
Vra5g0738 625 PANTHER D4, ISOFORM A 124 613 - -
Vra5g0738 625 SMART PHD_3 504 549 IPR001965 -
Vra5g0738 625 SMART PHD_3 451 503 IPR001965 -
Vra5g0738 625 SMART PHD_3 340 387 IPR001965 -
Vra5g0738 625 MobiDBLite consensus disorder prediction 561 580 - -
Vra5g0738 625 Pfam PHD-finger 504 550 IPR019787 -
Vra5g0738 625 Pfam PHD-finger 341 388 IPR019787 -
Vra5g0738 625 MobiDBLite consensus disorder prediction 561 597 - -
Vra5g0738 625 PANTHER HISTONE ACETYLTRANSFERASE 124 613 - -
Vra5g0738 625 ProSiteProfiles Zinc finger PHD-type profile. 338 389 IPR019787 -
Vra5g0738 625 MobiDBLite consensus disorder prediction 72 94 - -
Vra5g0738 625 Gene3D - 232 389 - -
Vra5g0738 625 ProSiteProfiles Zinc finger RING-type profile. 452 502 IPR001841 -
Vra5g0738 625 ProSitePatterns Zinc finger PHD-type signature. 341 386 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0738 Vra-Chr5 12577737 12586858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0738 503 572 C2H2 Transcription Factor Family AT3G01460 47.222 1.32e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra5g0738 PHD 8e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0738 - - vra:106762438 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0738 5 12577737 12586858 Vra5g0738 5 12577737 12586858 ECH
Vra6g1413 6 27835406 27851581 Vra5g0738 5 12577737 12586858 PCT