Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0719 ATGGCTCTTCAAGTTCCACCATTATCTTCACTTTTAAAGGAATTGCCAAAGCAGCTCAGTACCTCTTACATAGCCATTTTTTTCTTCTTCTTAAGCCTCCTTTTTGTGCTTAAGAACCAAAGAAGAAGAAACAAGTCCAATTTGCCTCCTTCCCCACCAAAACTACCCATAATTGGAAACCTTCATCAACTGGGCACTCTCCCACACCGCTCCTTCCAAACACTGTCTCGCAAGTATGGCCCTCTCATGTTTCTGCAATTAGGCCAAACTCCGACTCTTGTGGTTTCATCAGCTGATGTGGCCAAAGAAGTTTACAAAACCCATGATGTTGCTTTCTCCAATAAGCCTCAAACCACAGCCGTGAAAATCATCATGTATGGGTGCATGGACGTGGCTTTTTCACCCTATGGGGAAGAGTGGAGACAGAAAAGGAAGATCTGTGTTCTTGAGCTTCTAAGCATCAAAAGGGTGCGATCCTTTCAGTTCATTCGAGAGGAAGAAGTTGAAGCCATGCTTGGTGCCATACGTGAAGCATGCAGCGCGGATAAAACGTCTTCTTGCGTGAACCTGACTGAGATTCTGATTGAAACCTCCAACAACATAATGTCTAGATGTGTTCTTGGAAGAAAGTATGATAACCCAGATGGTGGAATCAGCTTTGGAGAGCTAGGAAGGAAGATGATGAAACACCTAGCCACTTTCTCGGTGGGAGATTTCTTTCCTTTGTTAGGTTGGATTGACGTTCTTTCTGGCCAAATACCAGAATTTAAGGCCACTTTCAGGGCATTAGATTCTTTCTTTGATCAGTTAATTGCTGAACGCAAGAGAATAATGAAGATGGACAGTTACCAACCTCGTAACAAAGACTTCGTGGACTCACTACTTCAGATTCAAGATGGTGCAGGAAACCATGATTTTCAGCTTACACACGATGACGTAAAGGCAATCCTAATGGACATATTTGCTGGAGGAAGTGACACTACTTCAACGCTTCTGGAATGGGTATTTGCGGCGCTCTTGAACAATCCTGCTACCATGAAGAGAGCTCAAGAAGAAGTAAGAAGAGTTGTCGGGCAGAAACTAAAAGTGGAAGAAAATGATTTGAATGAAATGCATTACCTAAAATGTGTAGTGAAAGAAACTCTGAGATTATATCCACCTGCTCCTCTTTTGATACCCCGAGAAACTTTATCCGATGTAAAAGTCAAAGGTTTCGATATTCCATCCAAAACAAGAGTGTTTGTGAATGCATGGGCGATTCAGAGGGACCCTGAAATTTGGAAAAGACCTGAAGAGTTTCTTCCCGAGAGATTTGAAGAAGAGCCCGAAGTTGATTTTAGAGGAAATGATTTGCAGCTTATTCCCTTTGGTTCAGGGAGAAGAGGGTGTATTGGAATTTCATTTGCACTTGCTTCCACCGAGTTTATGCTTGCTAATCTCCTCTACTGGTTTGATTGGAAGATTCCTCATGAGACTGGTAAACCAGTGCAAGATGTAGACATGAGTGAGATATGGGGACTCACTGTCATCAAGAAAGTACCACTTCATCTTCAACCTCAACTACACTCATTTGGTGTCTACAATTAA 1587 0.4241 MALQVPPLSSLLKELPKQLSTSYIAIFFFFLSLLFVLKNQRRRNKSNLPPSPPKLPIIGNLHQLGTLPHRSFQTLSRKYGPLMFLQLGQTPTLVVSSADVAKEVYKTHDVAFSNKPQTTAVKIIMYGCMDVAFSPYGEEWRQKRKICVLELLSIKRVRSFQFIREEEVEAMLGAIREACSADKTSSCVNLTEILIETSNNIMSRCVLGRKYDNPDGGISFGELGRKMMKHLATFSVGDFFPLLGWIDVLSGQIPEFKATFRALDSFFDQLIAERKRIMKMDSYQPRNKDFVDSLLQIQDGAGNHDFQLTHDDVKAILMDIFAGGSDTTSTLLEWVFAALLNNPATMKRAQEEVRRVVGQKLKVEENDLNEMHYLKCVVKETLRLYPPAPLLIPRETLSDVKVKGFDIPSKTRVFVNAWAIQRDPEIWKRPEEFLPERFEEEPEVDFRGNDLQLIPFGSGRRGCIGISFALASTEFMLANLLYWFDWKIPHETGKPVQDVDMSEIWGLTVIKKVPLHLQPQLHSFGVYN* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0719 528 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS P450 superfamily signature 454 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS P450 superfamily signature 463 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 19 521 - -
Vra5g0719 528 Pfam Cytochrome P450 49 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 SUPERFAMILY Cytochrome P450 49 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 Gene3D Cytochrome P450 34 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 Coils Coil 346 366 - -
Vra5g0719 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 456 465 IPR017972 GO:0005506|GO:0016705
Vra5g0719 528 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 100 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 453 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PRINTS E-class P450 group I signature 463 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra5g0719 528 PANTHER CYTOCHROME P450 71B11-RELATED 19 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0719 Vra-Chr5 11688368 11690308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0719 28 516 Cytochrome P450 AT3G48280 43.265 3.10e-140 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0719 K20617 - gmx:100792382 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0719 5 11688368 11690308 Vra5g0719 5 11688368 11690308 ECH
Vra5g0719 5 11688368 11690308 Vra7g1608 7 34522896 34526000 PCT