Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0713 ATGTCTATCACTGCCACTGCGTTCAAATCTCTTACCATGGCCGATTCGTGCCTCCTCTCTTCTCCCTCTTCTCCCTTTCACAACATAACCAAATCCCACGTTTTCTCACATCCTTCCAAACCCCTCACACTCCAATTCTCATGCCTCAATTCCTCCCCCTCGCTCTCTCTCTCCCTCGCTGCACGAACCCACCGTTCCCCCGTCCTCACCCACGTCGCCCAAACTTCTGATTGGGCCCAGCAAGAAGACAACACCGCCACCTTCCAGGCCCAGGAGGAAGAACAAGAAGGGGGTGGCCTCCTCGATTGGGAGGTCGCGGGCGAAGGCGCGGAAGATGAGGGTTTCGTGGAACCACCGGAAGAGGCCAAGCTCTTCGTCGGGAACTTGCCTTACGACGTTGATAGTCAGAAATTGGCCATGCTATTCGAACAAGCCGGAGTCGTCGAAATCGCCGAGGTGATTTATGCCAGGGACACTGACCGGAGTCGTGGATTTGGATTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGAGAAATTCAATAGCTATGATTATGATGGAAGACTATTGACTGTTAATAAGGCTGCTCCGAGAGGAGCTCAACCTGAACGCCGACCTCGTCGTAACTTTGAGCCTGCCTTTTCTGTCTATGTTGGTAATTTGCCGTGGGATGTTGATGGTACCAGGTTGGAGCAAGTTTTCAGCGAGCATGGTAAGGTTTTGAGCGCTAGGGTAGTCTATGACAGGGAGAGTGGTCGTTCACGTGGCTTTGGCTTTGTCACAATGTCGGATGAGTCAGAAATGAATGATGCTGTTAGTGCTCTTGATGGTCAGACTTTGGACGGAAGGACAATTAAGGTGAATGTTGCTGAGGACAGACCCCCCAGGCGTAGCTCCTTTTGA 912 0.5164 MSITATAFKSLTMADSCLLSSPSSPFHNITKSHVFSHPSKPLTLQFSCLNSSPSLSLSLAARTHRSPVLTHVAQTSDWAQQEDNTATFQAQEEEQEGGGLLDWEVAGEGAEDEGFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGVVEIAEVIYARDTDRSRGFGFVTMSTVEEAEKAVEKFNSYDYDGRLLTVNKAAPRGAQPERRPRRNFEPAFSVYVGNLPWDVDGTRLEQVFSEHGKVLSARVVYDRESGRSRGFGFVTMSDESEMNDAVSALDGQTLDGRTIKVNVAEDRPPRRSSF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0713 303 CDD RRM_HP0827_like 123 200 - -
Vra5g0713 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Vra5g0713 303 PANTHER RIBONUCLEOPROTEIN 2 92 - -
Vra5g0713 303 PANTHER RIBONUCLEOPROTEIN 101 301 - -
Vra5g0713 303 Gene3D - 68 207 IPR012677 -
Vra5g0713 303 CDD RRM_HP0827_like 220 294 - -
Vra5g0713 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Vra5g0713 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Vra5g0713 303 SUPERFAMILY RNA-binding domain, RBD 118 211 IPR035979 GO:0003676
Vra5g0713 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Vra5g0713 303 SMART rrm1_1 123 196 IPR000504 GO:0003723
Vra5g0713 303 SMART rrm1_1 218 291 IPR000504 GO:0003723
Vra5g0713 303 Gene3D - 208 302 IPR012677 -
Vra5g0713 303 SUPERFAMILY RNA-binding domain, RBD 211 301 IPR035979 GO:0003676
Vra5g0713 303 PANTHER OS02G0815200 PROTEIN 101 301 - -
Vra5g0713 303 PANTHER OS02G0815200 PROTEIN 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0713 Vra-Chr5 11588808 11591167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0713 122 300 Eukaryotic Initiation Factors Gene Family AT3G16380 31.285 7.15e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0713 - - gmx:100810381 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0713 5 11588808 11591167 Vra7g1612 7 34573409 34576134 ECH
Vra5g0713 5 11588808 11591167 Vra5g0713 5 11588808 11591167 ECH
Vra7g1612 7 34573409 34576134 Vra5g0713 5 11588808 11591167 PCT