Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0710 ATGGTTGCCAAAACTCGCTTATTGCTTCTTTCACTGTTTTTCTTCTTAATCTCCATCCACGCCAAGCTTCAACTCTACCCCTCAGACTTCAAGGCACTCTTGGCTCTGCGAAAGGACTTCGGAGTCAACGGTCAACTCGACCTAAATGAAGCATGTTACACGGAGGGTGTCTTCTGCGAGCGAAGGCTCTCCACCAAGGAAACCTACGTCCTCCGAATAACCAGGTTGCTCTTCAAATCAAAGCATCTCAAAGGTGTCTTGTCCCCCGCAATAGGACGCCTCACCGAGCTCAAACAACTCCTTCTCTCCGACAACCAACTCGTTGACCGCCTCCCTCCCCAAATCGTTGACTGCCGCAAGCTCGAAATCCTCGACCTTTCCAACAACCTCTTCTCCGGGGAGGTCCCCTCCGAACTCTCCTCTCTCACGCGCCTTCGCGCGTTGGACATATCCTCCAACCAATTCTCCGGCAACCTCAACTTCCTCAAGTACTTCCCCAACCTCGAAACCCTCTCCGTCGCCGACAACCTCTTCACCGGAAGGGTGCCTTCTTCCGTCCGCTCCTTCCGGAACCTCCGCCAATTCAACTTCTCCGGCAACAGCTTCCTCGAACCCTCTCTCCACTCCTCATCAGACCCCGTTCTCTCGAGACGTTTCCTCTCGGACGATGGGGATGCACCTTCTCCTGCGCCTGTCCCAAGCAAGAGAAACTCCCAAGGCTCTAATGTTTCCCCTGCATCCGCACCTGGTCCTTCACCTAACCATCATAAACACAAGCACACTAAGAGAAAACTCCTAGGGTGGATTCTCGGGTTTTTGGCAGGGGCACTGGCTGGAACCTTATCAGGGTTCGTGTTTTCTCTGTTGTTCAAACTGGCTTTGGCGTTGATAAAAGGAAGAGGAAAGAGAGCGGGTCCTGATATTTTTAGTCCCTTGATTAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAAGAAGACGGACTCGCTTCGATGGAAGTCATTGGACGCGGTGGCTGTGGAGAGGTTTACAAGGCTGAGTTACCAGGAAGCAATGGCAAAATGATTGCTATAAAGAAAGTTATTCAACCTCCCAAAGATGCTGCTGAATTAGCAGAGGAAGATAGCAAGGCTATGCATAAGAAAATGAGGCAAATTCGGTCTGAGATTAACACTGTGGGACAAATTAGACACCGAAACCTTCTGCCTCTGTTAGCGCATGTTTCTAGGCCTGATTGCCACTACCTCGTTTATGAGTTCATGAAGAATGGTAGCTTGCAGGACTTGTTGCAAAAGGTTCAAAGGGGTGAGGGAGAGCTGGATTGGTTGGCACGGCATAGAATCATGCTTGGTGTTGCTGCTGGACTTGAATACCTTCACATGAATCACAGCCCTCGCATCATTCACAGGGATCTTAAGCCTGGAAATATTCTTCTTGATGATGACATGGAAGCACGCATAGCTGATTTTGGACTCGCTAAGGCCATGCCGGATTACAAGACTCACGTAACCACCTCCAATGTGGCTGGCACTGTGGGGTACATTGCTCCCGAGTATCACCAGATACTTAAGTTCACTGATAAGTGTGACATCTACAGCTTTGGAATCATCCTTGGGGTGTTGGTGACTGGGAAGCTTCCTTCCGACGAGTTCTTTCAGAACACTGAAGAGATTAGCTTGGTCAAGTGGTTGAGGAAGATTTTGAGTTCTGAGAATCCCAAGGAGGCTATTGATCCGAATATGCTCGAAAATGGGTATGAGGAGCAGATGCTTCTGGTTGCGAAGATTGCATGCTTTTGCACCATGGATGATCCCAAAGAGAGGCCTAACGCAAAGGATGTTAGGTGCATGTTGTCTCAGATCAAACACTGA 1869 0.4938 MVAKTRLLLLSLFFFLISIHAKLQLYPSDFKALLALRKDFGVNGQLDLNEACYTEGVFCERRLSTKETYVLRITRLLFKSKHLKGVLSPAIGRLTELKQLLLSDNQLVDRLPPQIVDCRKLEILDLSNNLFSGEVPSELSSLTRLRALDISSNQFSGNLNFLKYFPNLETLSVADNLFTGRVPSSVRSFRNLRQFNFSGNSFLEPSLHSSSDPVLSRRFLSDDGDAPSPAPVPSKRNSQGSNVSPASAPGPSPNHHKHKHTKRKLLGWILGFLAGALAGTLSGFVFSLLFKLALALIKGRGKRAGPDIFSPLIKKAEDLAFLEKEDGLASMEVIGRGGCGEVYKAELPGSNGKMIAIKKVIQPPKDAAELAEEDSKAMHKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDLLQKVQRGEGELDWLARHRIMLGVAAGLEYLHMNHSPRIIHRDLKPGNILLDDDMEARIADFGLAKAMPDYKTHVTTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGIILGVLVTGKLPSDEFFQNTEEISLVKWLRKILSSENPKEAIDPNMLENGYEEQMLLVAKIACFCTMDDPKERPNAKDVRCMLSQIKH* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0710 622 SUPERFAMILY L domain-like 70 205 - -
Vra5g0710 622 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 6 622 - -
Vra5g0710 622 SMART serkin_6 328 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0710 622 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Vra5g0710 622 Gene3D Phosphorylase Kinase; domain 1 317 419 - -
Vra5g0710 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vra5g0710 622 CDD STKc_IRAK 334 620 - -
Vra5g0710 622 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
Vra5g0710 622 ProSiteProfiles Protein kinase domain profile. 328 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0710 622 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 622 - -
Vra5g0710 622 MobiDBLite consensus disorder prediction 232 249 - -
Vra5g0710 622 Pfam Protein kinase domain 331 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0710 622 Gene3D Ribonuclease Inhibitor 26 223 IPR032675 -
Vra5g0710 622 MobiDBLite consensus disorder prediction 218 259 - -
Vra5g0710 622 Gene3D Transferase(Phosphotransferase) domain 1 420 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0710 Vra-Chr5 11536716 11539064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0710 1 622 Receptor kinase-like Gene Family AT2G31880 62.085 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Vra5g0710 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0710 - - gmx:100811980 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0710 5 11536716 11539064 Vra5g0710 5 11536716 11539064 ECH