Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0702 ATGGATTCCCCAACCCTTCTCTTCCCCCAACCCGATCTCTATTTACAGACTCACGCTGGCAACCGCATTCCAGTGCACGCTACCATTCTGGCTTCTGCATCCCCGGTTCTACAAAACGTGATAAAGTCCTCCAACCGAATAGTCAAAATCCACGGCGTTCCAGACGCTGCCGTCACGGCTTTCGTAGCGTTCCTCTACTATGCCAGGTGCACGGAGGAGGATATGGATAAGTACGGAATGCACCTTCTGGTACTGTCGCACGTGTACACGGTGAAGCATCTGAAACAGCGGTGCATCAAGGGACTGGGCGACCGCGTCAGTACGGAGAACGTAGTGGACGTGTTGCAGCTGTCGCGGCTCTGCGACGCGCCGGATCTCTACCTCAAGTGTGCCAGGCACCTCACGAACCGTTTCAAAGCGGTGAAGGAAACCGAGGGATGGAGATTCCTGCAGAACCACGACCCCTGCCTAGAGCTTGAGATTCTCTGTTTCATGGAAGAACATGAAAAGAGGAAGAGGAAGGCGAGGAAGAGGAGGGAGGATGGTAGGTTATTCACGGAATTGAGCGAAGCGATGGTATGTCTGGAGCACATATGCACGGAGGGATGCACGGAGGTGTGGCCGTTTGATGTGGAGGTCAGGCGAGAGAGAGAACCGTGTTCAATGTTCGGCACGTGTCAGGGTATGCAAAATTTGATTCGACACTTCGCCACCTGCGAGAGCGTTAAGGGACGGTGTTTACGGTGTAAGCGTATGTGGCAACTCTTCAGACTTCATTCCTCTATTTGCCTGCAACACGATACCTGCAAGGTTCCTCTGTGCAGTCAAATCAGATTAAAAATGGAGAAAGAGAAGAGGAAAGGTGACGCAAGGTGGGAACTACTAGTGAGGAAGGTGGCCTCGGTCAAAGCCATGTCTTCCTTGGCACTGCCAAAGAGGAAGATGGTTGAGGAAATTAGACGAAAGGTACCATAA 975 0.5221 MDSPTLLFPQPDLYLQTHAGNRIPVHATILASASPVLQNVIKSSNRIVKIHGVPDAAVTAFVAFLYYARCTEEDMDKYGMHLLVLSHVYTVKHLKQRCIKGLGDRVSTENVVDVLQLSRLCDAPDLYLKCARHLTNRFKAVKETEGWRFLQNHDPCLELEILCFMEEHEKRKRKARKRREDGRLFTELSEAMVCLEHICTEGCTEVWPFDVEVRREREPCSMFGTCQGMQNLIRHFATCESVKGRCLRCKRMWQLFRLHSSICLQHDTCKVPLCSQIRLKMEKEKRKGDARWELLVRKVASVKAMSSLALPKRKMVEEIRRKVP* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0702 324 Gene3D - 107 181 - -
Vra5g0702 324 ProSiteProfiles BTB domain profile. 11 74 IPR000210 GO:0005515
Vra5g0702 324 Gene3D Potassium Channel Kv1.1; Chain A 10 106 IPR011333 -
Vra5g0702 324 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 5 321 IPR044513 -
Vra5g0702 324 SMART TAZ_2 182 275 IPR000197 -
Vra5g0702 324 CDD BACK 107 150 - -
Vra5g0702 324 Pfam BTB/POZ domain 11 100 IPR000210 GO:0005515
Vra5g0702 324 SUPERFAMILY POZ domain 12 103 IPR011333 -
Vra5g0702 324 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 5 321 - -
Vra5g0702 324 Gene3D TAZ domain 184 306 IPR035898 -
Vra5g0702 324 Pfam TAZ zinc finger 189 274 IPR000197 -
Vra5g0702 324 SUPERFAMILY TAZ domain 183 283 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0702 Vra-Chr5 11371188 11374750 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vra5g0702 BTB 3.8e-08 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0702 - - pvu:PHAVU_009G170600g 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0702 5 11371188 11374750 Vra5g0702 5 11371188 11374750 ECH
Vra7g1617 7 34618899 34621959 Vra5g0702 5 11371188 11374750 PCT