Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0701 ATGACAACTTTGCTTTTCTTCTTCTTCTTTCTCCTCCCTCCTACCCTTTTATCTTCACCAGTTCAAAATCCTGAAGAGGTTGTTCAAGAGGTCAACAGGAAAATCAACGCCTCCATAGCTAGGCCTAGGAGGAGCTTGGGCTATCTTTCATGCGGCAGCGGCAACCCCATTGATGACTGTTGGCGGTGCGACCCGAATTGGGAGAAGAACCGGCAAAAGCTAGCGGACTGCGCAATCGGGTTCGGAAAGAACGCCATCGGCGGAAGGGATGGGAAGATCTACGTGGTGGACGACGCCGGCGACGACGACCCGGTGAACCCGAAGCCAGGGACGCTCCGCCACGCCGTGATCCAAGACGAGCCCCTCTGGATCATCTTCGCGCGCGACATGGTGATCCAGCTGAAGGAGGAGCTTCTGATGAACTCCTTCAAGACAATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGCCCCTGCATCACCGTGCAGTACGTGACGAACATCATCATCCACGGCATCCACGTGCACGACTGCAAGCAGGGAGGGAACGCAATGGTGCGCGCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGCGTGTCGATCTTCGGAGGAAGTCACGTGTGGGTGGACCATTGCTCCTTGTCGAACTGCAACGATGGGTTGATCGACGCCATCCATGGGTCCACCGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTCATGCTCTTAGGTCACAGTGACGCTTACACTCAGGACAAGGACATGCAAGTCACTATTGCTTTCAACCACTTCGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTTGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGGAGTGCTAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCAGCAGAGAGTGAATGGCAGAGTTGGAATTGGAGATCAGAAGGGGACATGTTAGTAAATGGTGCATTTTTCACTGCTTCTGGTGCTGGAGCCTCCTCAAGTTATGCAAGGGCTTCAAGCCTAAGTGCAAGACCATCTTCACTTGTTGGTTCCATTACAACAGGTGCTGGTGCACTCACCTGCAAGAAAGGTTCTCCTTGCTGA 1212 0.5347 MTTLLFFFFFLLPPTLLSSPVQNPEEVVQEVNRKINASIARPRRSLGYLSCGSGNPIDDCWRCDPNWEKNRQKLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHVHDCKQGGNAMVRASPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQSWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALTCKKGSPC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vra5g0701 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vra5g0701 403 SUPERFAMILY Pectin lyase-like 45 397 IPR011050 -
Vra5g0701 403 Pfam Pectate lyase 141 320 IPR002022 -
Vra5g0701 403 Gene3D - 54 396 IPR012334 -
Vra5g0701 403 PANTHER PECTATE LYASE 4 400 - -
Vra5g0701 403 SMART amb_all 129 326 IPR002022 -
Vra5g0701 403 PANTHER PECTATE LYASE 18-RELATED 4 400 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0701 Vra-Chr5 11346672 11349217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0701 4 403 Polysaccharide Lyase AT5G63180 80.348 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0701 K01728 - gmx:100814679 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0701 5 11346672 11349217 Vra7g1619 7 34649429 34651382 ECH
Vra2g1444 2 22514212 22516341 Vra5g0701 5 11346672 11349217 ECH
Vra5g0701 5 11346672 11349217 Vra5g0701 5 11346672 11349217 ECH
Vra7g1619 7 34649429 34651382 Vra5g0701 5 11346672 11349217 PCT