Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0699 ATGATGGAAGGGCAGCGGCATTCGGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCCTCAACTAATTCTATGAGCAAGCTCTGTTATTTGATCGATAATGTGCATTGGGAAAATGGTTCTGCTAATGACATTTCCCTTAGGTTTTCTGATGCTGTTAAGCCATGTGATTCTGATGATAATGCTGCTATCAGATCAAGAAATTTAGGTTTCAAGGCACAAAGGGAGCAGAAAGATGCTGATTCTGCATTCAACTCAAGGCTGAAGCCTAATGGGATTTCTTGCCAGGGTCTCCAACAAGATGGCGAACCAGTTTACTCTAAGCGTAATCTGCAATGCATTTCTGGAAACAAATCACCAAGTGAAAGTTGTGGTAGCAACCATGGGGGTAAAGGATTGGACTTGACTTCAGTTGTGCTTCCAAGTAATAATGATTTCAAGGATGGGGATTCATGTTATGTAGCAACTGCTATATCATCTCAATTAGGGAGAATAGATTGCTCTAAGTCAGCAAAAAAGTCTCTGCGCAAGAATCAAGTAAAACCATCAGAGTTAGTAGGCAGTGTTGATGGCAATGTTAGTCCATACCCTTCTGGTTATGATGCTTTCTCACCCTATAGTGGTTCAGTAGGCATAAATCAAGGTATGGGTAGTTTAGATGATAATGATAATGGGTGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGATTTAGAGAATCCAATCTATATGGTGAGATAGAAGACCGTCCTTTGATATCTCACCGTGTTGATGAGTCAGATCTTCATGCACCCAGAAGCATGAGAAACAATGGTGGCGGGATTGGTCTGAATTTGGAAACTCCTAGAAGTTTGTCCATGAAATTTAGGCCTAAAACATTTAGTGATTTGGTTGGACAAAATGTGGTAGTAAGGTCTCTGTTGGGGGCCATCTCCAGAGGAAGGATAACATCCTTTTATCTGTTCTATGGTCCACGTGGAACCGGCAAGACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGTCTTTCTTTTGAGGAACAGAGGCCATGTGGCCTATGCAGAGAATGTATTGTATTCTTTTCTGGAAGAAGTAAAGATTTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACCGACCAGGTTAAGTCCCTTGTTAAGAGTGCAAGCACCCCCCCAGTCTCCTCACGTTTCAAGGTTTTCATTATTGATGAGTGCCAGCTATTGAATGTGGAAACATGGGCAAGCATTTCCAATAGCCTTGATAACCTTTCTCAACATGTGGTTTTCGTGATGATAACTCCTGAGTTGGATAAGCTTCCTCGGAGTGTAGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGGTTAAAGACGCTGACATTGTATGCAGATTGCAAAGTATTTGTGCCGAAGAAGCTCTTGATTTTGAACAGGAAGCTTTGGACTTTATTGCTGCAAAATCTTGTGGGTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTGGGTAAAAAGATCAATATCTCTTTAGCTTATGAGCTTACTGGGATCGTTTCAGATGATGAATTACTCGATTTGCTGGATCTAGCTTTTTCATCCGACACTTCAAATACAGTCATTAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCAACTTGTATCACAATTAGCAAATCTCATTATGGACATACTTGCAGGGAAATGTGAAAATGGTGGTCCAGAAGTCAGAAGTAGATTTTATAGGAAATATACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGCTGAGAATTTCTAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGCTAAGTTCTGTAGATTATCAATGTGTGGATGCAAATGACACCAAATTTAGTCTTAGAGGTGCATGCAATGGAGTTCAAAACTTGGAGCATTTTGCTAACAAGTCATACAGATTAGGAGTGCCGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCCACTGAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCCGAGTTAGAGTTCCAGCATAGTCACCATGTATCCAAGGCCGAGAAGTCATGGAAAATGATTGCAAGCTCTTTGCAATTCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCAGATTCTAGGTATTGCAAACTGAAGAGATCAACTTTCAGTTTCTTCACTTGTTCCGGCAGAAATCGGCAACAGAAGTCACTGTCATCTAATGAACAAGGAAGTGAATCAGATTATGGTGATTGCTCCTCAGAAAATCCCATTATAAAGGACAAAACTTCTACCTCTGATTGTGGAATGGATGCTGTAACAGCTTTGAGGAGTTGTGAAGGGAATTTGCTGAGCTCAGGGGAAAGATTTTTTAATAGATCATTTCAAGAGGGTACGAAGACATCATGTGTTGAAGTTGATTCTTCCAAGGAAAAGGGTTGCAATGGTGCTCATCTAGATCCATCAATCCTTGATTCAGATAATGACCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCGTATTCATCCAAGTTGTCTTTTCAAGGCATGCAACAACAGAAAGATTTTGTTTTGTCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGCTAATGAACCCTGCATTTTTTCTGGTAGCTGTAAGAATTGCACCAAAGCTTCTTAG 2868 0.409 MMEGQRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLCYLIDNVHWENGSANDISLRFSDAVKPCDSDDNAAIRSRNLGFKAQREQKDADSAFNSRLKPNGISCQGLQQDGEPVYSKRNLQCISGNKSPSESCGSNHGGKGLDLTSVVLPSNNDFKDGDSCYVATAISSQLGRIDCSKSAKKSLRKNQVKPSELVGSVDGNVSPYPSGYDAFSPYSGSVGINQGMGSLDDNDNGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDESDLHAPRSMRNNGGGIGLNLETPRSLSMKFRPKTFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGLCRECIVFFSGRSKDFKEVDSVRINRTDQVKSLVKSASTPPVSSRFKVFIIDECQLLNVETWASISNSLDNLSQHVVFVMITPELDKLPRSVVSRAQRYHFPKVKDADIVCRLQSICAEEALDFEQEALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGPEVRSRFYRKYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQCVDANDTKFSLRGACNGVQNLEHFANKSYRLGVPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSTACLAIAELEFQHSHHVSKAEKSWKMIASSLQFILGCNVELRITYTPCASDSRYCKLKRSTFSFFTCSGRNRQQKSLSSNEQGSESDYGDCSSENPIIKDKTSTSDCGMDAVTALRSCEGNLLSSGERFFNRSFQEGTKTSCVEVDSSKEKGCNGAHLDPSILDSDNDHFNCFPKTLWLQKKFRSSYSSKLSFQGMQQQKDFVLSVPKCTCSGTYTYANEPCIFSGSCKNCTKAS* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0699 955 MobiDBLite consensus disorder prediction 796 817 - -
Vra5g0699 955 Coils Coil 605 628 - -
Vra5g0699 955 SUPERFAMILY post-AAA+ oligomerization domain-like 536 638 IPR008921 GO:0003677|GO:0006260
Vra5g0699 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 515 IPR027417 -
Vra5g0699 955 Gene3D - 467 529 - -
Vra5g0699 955 CDD HLD_clamp_pol_III_gamma_tau 466 529 IPR045085 -
Vra5g0699 955 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 117 934 - -
Vra5g0699 955 CDD AAA 307 457 - -
Vra5g0699 955 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 117 934 - -
Vra5g0699 955 Gene3D - 530 643 - -
Vra5g0699 955 Pfam DNA polymerase III, delta subunit 309 466 - -
Vra5g0699 955 Gene3D - 287 464 IPR027417 -
Vra5g0699 955 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 293 639 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0699 Vra-Chr5 11232145 11237244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0699 297 581 Core DNA Replication Machinery Family AT1G21690 25.606 3.07e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0699 - - gmx:100812040 1535.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0699 5 11232145 11237244 Vra5g0699 5 11232145 11237244 ECH
Vra7g1620 7 34668040 34673672 Vra5g0699 5 11232145 11237244 PCT