Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0692 ATGAGAGCCACGGAGAAGAAATCAGGGATAATGGGAGGGGGTTCTGAGGGTAGTGCCGACGTTTTGCCGTGGCTGAAATCGATGCCGGTGGCACCGGAGTACCGGCCGACTGCGGCAGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCTCCTTCTCCAAAGAAAACCGCCATCGCCAACCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGGCCCCGCCCCGTGCAGCGCCCTGTCTGGCAGAGCGGTGACCACTATACCTTCACGGAGTTCGAGTTCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACACCAGAAAAGGTCCGAGTCCAGGCCCAGGTCTGACCCCACTTGAGACCGAAACGCTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAATACGCCAACGACATGCCGGGTTCCGCGTTCTCCCCCAAATGCCGGCACACAGGGGATCCCACTTCCCTTGCGGACACTCCTTGGAACATGCGAGCTGTTTCGCGGGCCACGGGCTCACTCTTGCGCTTCATGAAGGAGGAGATTCCCGGCGTTACTTCTCCAATGGTCTATGTTGCCATGCTCTTCAGCTGGTTCGCTTGGCATGTCGAGGACCACGACTTGCACAGCCTGAACTACCTCCACATGGGTGCCGGCAAGACCTGGTACGGCGTCCCTCGAGATGCTGCTGTCGCGTTTGAGGAGGTTGTTAGGGTTCACGGCTACGGTGGAGAAATTAATCCTCTCGTTACATTTGCTATTCTTGGTGAGAAAACCACGGTGATGTCGCCTGAAGTATTTCTCAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAACTGTGGAGAGGCAGCGAACATTGCTACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCGCTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCAAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGCTACAGAACAATGACCTGCTTCATATACTGGGGAAAGAATCTGCTGTAGTACTTCTACCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGATTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAACTTTCTATTCCGTGAAAGACAAGTTTAGTACGATGTATGAAAGGAATAGGGTTTCCTCTTTTGATGTAAATGGTAGCTTAATCTCTTCAAGTTCTAAGCCACTTCAAAGGGACACTGAGGGAGGAACTAGTAAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACTTGTGGAATATTGAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGATCCGGCTGCTAGATATCTCGTGTCAGCTGATTGCAGCTTCTGTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAGTAAACTTACTACTGCCCCTGAAAAAGCAATTATTCCTGTGCCAAATATGTATACAGGATGGATGAAAAAAAATGTCCAAGATGGTATGCAAGATGTTTCTGTTCAATCTTCTCGGTATGCTTCAAGTATTGAAAGTGAAAAGGGCAATACAGCTCTTGCACTATTGGCTTCAGCGTATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTTCAGTTGATGGTCATGAAACAAATGTGCTGACCTCTGCTTCAGAAAGTTTACTTTCTCATACTCAAGATTCCCATGCTAGTCCCGTGGCTGCACTTGATAGCGGAGATAATATTACGTTGATGAGTGCCAGTTGTGAGGGTTTAATGCATCGTAGATTTGAGGGTAATTTAAGTCATCAATCTTTAGACCACTCTTTAAAGAAACAGGATTATAATATCACATCAGGGGTTACATTTGAAAATATGAAGACAGTGCCTAATTCCACCTCAAATTGTTCCCAAGATGCCAATGACGCTGAAAGGTCATTGTCTAAAATGTCTATGGTTCCCTTTGATAATAAAAATGCTTCCATGGTGTTACAGTCTGATGAAGATTCATCCAGAATGCATGTGTTCTGTCTGGAGCATGCTGCAGAAGCAGAGAAGCAACTTCGCCCAATTGGTGGAGCCCACATATTTCTCCTATGTCATCCAGACTATCCCAAGATAGAGGCTGAAGCAAAAGTGGTGGCAGAAGATTTGGGGATTGATTACACATGGAAGAGTATTGCATACAGGCATGCTTCCAAGGAGGATGAGGAGAGGATCCAGTTGGCTCTGGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGAATCAATCTCTTTTATAGTGCACATCTTAGTCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATTCTGTTATATATTGTGCATTTGGTTGTAGCTCTCCAGCTAGCTCATCCGAAGAGCCAAAGGTCTATCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAACCAGGTCCATCCCCTTTTAGCGAAAAGAGATTCTGAAGATGCTGAGGATGAGAAAATCTTACTTGGGTGGATATCACCCGAGGAGAGAATTGAGAGATCAGAAAGTACCCCTAAAGGTGAAACTACTAGCAGAAAGTCAGGTAAGAAAAGGAAATCGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCATATAATTCCATTGAAGATAAACCCAACTCACAGCCAAGGAGTGTTCATAGAAGTAAGAAAGCCAGGAATGTTGGGAGAGATCGTGCTGCTTTGAAAGGGGATACTTCTGCATATAATCATAGAAAACCTATTAGCAAAGAAACAAACTTTACTGAAAGTGATGCGGTTTCTGATGATTCACTTGATGATGAAGATGATCACATGCAGCATGGGAGGAATTTTGACATTGACAATCATGTGGTTTCAGATGATACAGGGGACTGTGATTCTGATTGGCAGCAGAGGGAAGAACATAGCAGCAAGGACGATGAAGATATGGAGAGAGATGCAATTTCAGAGGATTCTGAAGGCAAGCATGACAAATTCATCAGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTTGTTTTCAAAAGCGGCAAAGGAGAACTCCTAAAAGCAGGCAAGCTAAGTATCTGACTGGAAAAAGTATAATATCCAACGACCAGCTAGAGCTGAAAATGCAGAAGCAGCAACGGAGGAATCCTCAAAGCAGGCAAGCCAAATACCTCGATGAAGAGGATATTGCTTCAGATGACCAATTGGAGGGCCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTGTAGTAGAGGAAGATGAAATGTCTGGTGACCAATTGGAGGATCATTGTCAGAAGCTGCAAACAAGTTTCTCTAGGAAAAAGCAAAACAAAGGCATTAATAGAGAAGATAAATATGTAATGTCTGATGACCAATTGGAGGATCATTTTCCAAAGCAGCAAAGAAGAATTCCGAAGAGCAGGCAAAACAGATACCCTGATAAAGAAGTTATGGATGACTCGGCTGAAAACAATACTCGTCTGCTGCATAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGACGAAGATGATTTGAATTCAGATGATGAAATGGAAGATGATCAGAAGCTGAGGAGAACTCTTAGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAGGCCAATTCCGTCCATGCAAAAAACCAGGCATCTCGGTCCATAAAACGGGGATCTCGGGTTCTTGTGAAATCAAAGACACCTCAGCAAATAAAACCGCGGAATAAGCAATCCACTAACTCCCGAGAGTTTAGTTTACTTGTGGAAGATGAGGAAGAAGGTGGACCTAGCACCCGCCTTAGGAAGAGAGCCACAAAAGCTCAGGGGACCGAAGGAAAATTGAAAGAGAAGCAAACAAAAAGGAAGAAGGTGAAGAATGATTCAACAGCAAAGGTTTCAGTTGGTCATGTCAAAGGAAAGGATGAGGAAGCAGATTATCAGTGTGATATGGATGGGTGCAGTATGAGTTTTGGATCAAAACAGGAGCTGCTGCATCACAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACAGAAGAGTTCATGAGGACGAGAGACCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTGTGTGCAGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCAGCGAAGAAGAGTCGTCAATAG 4746 0.4486 MRATEKKSGIMGGGSEGSADVLPWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFTEFEFKAKSFEKAYLKRHTRKGPSPGPGLTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPTSLADTPWNMRAVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFLSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKESAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKDFVSDDLVFNRSHGIKQEKTFYSVKDKFSTMYERNRVSSFDVNGSLISSSSKPLQRDTEGGTSKEDGLSDQRLFSCVTCGILSFSCVAIVQPRDPAARYLVSADCSFCNDWVVGSGVSNSKLTTAPEKAIIPVPNMYTGWMKKNVQDGMQDVSVQSSRYASSIESEKGNTALALLASAYGNSSDSEEDQISVDGHETNVLTSASESLLSHTQDSHASPVAALDSGDNITLMSASCEGLMHRRFEGNLSHQSLDHSLKKQDYNITSGVTFENMKTVPNSTSNCSQDANDAERSLSKMSMVPFDNKNASMVLQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHIFLLCHPDYPKIEAEAKVVAEDLGIDYTWKSIAYRHASKEDEERIQLALDSEEAIPGNGDWAVKLGINLFYSAHLSRSPLYSKQMPYNSVIYCAFGCSSPASSSEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDAEDEKILLGWISPEERIERSESTPKGETTSRKSGKKRKSTAENGRTRKGSYAKKNVVSYNSIEDKPNSQPRSVHRSKKARNVGRDRAALKGDTSAYNHRKPISKETNFTESDAVSDDSLDDEDDHMQHGRNFDIDNHVVSDDTGDCDSDWQQREEHSSKDDEDMERDAISEDSEGKHDKFISEEDIISDDQMESCFQKRQRRTPKSRQAKYLTGKSIISNDQLELKMQKQQRRNPQSRQAKYLDEEDIASDDQLEGHYRRYQRRNPKGRQAKCVVEEDEMSGDQLEDHCQKLQTSFSRKKQNKGINREDKYVMSDDQLEDHFPKQQRRIPKSRQNRYPDKEVMDDSAENNTRLLHRTPKRKQAKCMDEDDLNSDDEMEDDQKLRRTLRSKQSKPKTLQQMKQANSVHAKNQASRSIKRGSRVLVKSKTPQQIKPRNKQSTNSREFSLLVEDEEEGGPSTRLRKRATKAQGTEGKLKEKQTKRKKVKNDSTAKVSVGHVKGKDEEADYQCDMDGCSMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ* 1582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1404 1450 - -
Vra5g0692 1581 SUPERFAMILY beta-beta-alpha zinc fingers 1536 1570 IPR036236 -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 975 1007 - -
Vra5g0692 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1488 1517 IPR013087 -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1011 1025 - -
Vra5g0692 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1520 1542 IPR013087 -
Vra5g0692 1581 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 16 1571 - -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1196 1219 - -
Vra5g0692 1581 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Vra5g0692 1581 PANTHER LYSINE-SPECIFIC DEMETHYLASE 16 1571 - -
Vra5g0692 1581 ProSiteProfiles JmjC domain profile. 192 361 IPR003347 -
Vra5g0692 1581 Pfam JmjC domain, hydroxylase 225 343 IPR003347 -
Vra5g0692 1581 SUPERFAMILY Clavaminate synthase-like 192 379 - -
Vra5g0692 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1518 1547 IPR013087 -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1167 1195 - -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1382 1403 - -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 975 1229 - -
Vra5g0692 1581 ProSiteProfiles Zinc finger C2H2 type domain profile. 1548 1579 IPR013087 -
Vra5g0692 1581 Gene3D Classic Zinc Finger 1516 1545 - -
Vra5g0692 1581 Gene3D Classic Zinc Finger 1486 1515 - -
Vra5g0692 1581 Gene3D Classic Zinc Finger 1546 1580 - -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1350 1375 - -
Vra5g0692 1581 SMART JmjN_1 30 71 IPR003349 -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1079 1158 - -
Vra5g0692 1581 Coils Coil 1178 1198 - -
Vra5g0692 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1550 1574 IPR013087 -
Vra5g0692 1581 SMART cupin_9 192 361 IPR003347 -
Vra5g0692 1581 Pfam jmjN domain 32 65 IPR003349 -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1259 1326 - -
Vra5g0692 1581 SMART c2h2final6 1488 1512 IPR013087 -
Vra5g0692 1581 SMART c2h2final6 1518 1542 IPR013087 -
Vra5g0692 1581 SMART c2h2final6 1465 1487 IPR013087 -
Vra5g0692 1581 SMART c2h2final6 1548 1574 IPR013087 -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1040 1064 - -
Vra5g0692 1581 ProSitePatterns Zinc finger C2H2 type domain signature. 1490 1512 IPR013087 -
Vra5g0692 1581 SUPERFAMILY beta-beta-alpha zinc fingers 1504 1546 IPR036236 -
Vra5g0692 1581 MobiDBLite consensus disorder prediction 1253 1450 - -
Vra5g0692 1581 Gene3D Cupin 24 365 - -
Vra5g0692 1581 Coils Coil 1426 1446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0692 Vra-Chr5 11106602 11116402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0692 789 890 C2H2 Transcription Factor Family AT5G04240 34.314 2.84e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g0692 JmjC 1.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0692 - - gmx:100775271 2563.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0692 5 11106602 11116402 Vra5g0692 5 11106602 11116402 ECH
Vra5g0692 5 11106602 11116402 Vra7g1622 7 34696993 34705037 PCT