Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0689 ATGGGTAAAACTTTGTCCAGAACACTCGATCACGATCCTCAACAGTCAGATCTCAATCATGTTGCCCAAGATGATGATGCACTTAACAGGGAGCTTCAGAACAAGTTGGATTTGAAGGATGTGAGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGGGTGGGAAGTTGAGTGATGAAGGTGCTGCACCTGAAGGTGGTAAGGGTGAAGGGAGTGAGGATGATGGTGGTGGTGGTGGTGATGATGTTGTTGGTGTTGTTGATGATGATGATTGCAATGGAGGGGACGAAGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGGGTGGAGATGTGGAGGGAGTAGATAGCAGGGATGAGAGGAGCAGTGGGAGAGCTCAACAGTACCCGTTGAGGCCAGAGGCTGAAGACTGTGCGTATTATCTCAAAACTGGAAGCTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCACTTAAGAGGAAAAACCAGGCTAAGAAAGAGAATGCGGGAGAAAAAGAAGAACAGGCAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGTGGTTGTAAGTTTGGGAAGGCTTGTAAGTTTAATCACAAAAGGGAAAAGTGTTCATCCGCAAACCCAATTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGAAATGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTAGATATGATAATGGAAGTTCTGTTTCATTACAAGGTGTATCCCAGTCATCTATATCCTCGTGGTCTTCTACTAGACCATTAAATGAATCCACTCCTTTTGTGCCAATGATACTTTCAGCTAATCCAGGGGTTTCTCCTCAAAGTTCTGAATGGGACGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGTTATGGAAACAAATGTTTATATGCATCATCAACAACAAGTGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACTGGTGATTGCAAGTTTAAATCTAATTGTAGGTTTCACCATCCAAAGAATCGGATTACAAGATTACCTCCATGCAGCCTTAGTAACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAACTATGAATGGACTTGATCAACAATCCTCGTACTCAAATTCTGCTAGTGTTGATGTGTCTGAAAATGGAGGTGTCAGTGATGGGAATCAATAG 1419 0.4334 MGKTLSRTLDHDPQQSDLNHVAQDDDALNRELQNKLDLKDVSESEDKGSNLEDGGGKLSDEGAAPEGGKGEGSEDDGGGGGDDVVGVVDDDDCNGGDEGCDWIENVNESESDKVGGDVEGVDSRDERSSGRAQQYPLRPEAEDCAYYLKTGSCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHKREKCSSANPIAELNFLGLPIRVGEKECHYYMRNGSCKFGANCKFNHPDPTAGGGDSPSRYDNGSSVSLQGVSQSSISSWSSTRPLNESTPFVPMILSANPGVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPVMETNVYMHHQQQVQVEEFPERPGEPECSYFLKTGDCKFKSNCRFHHPKNRITRLPPCSLSNKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTMNGLDQQSSYSNSASVDVSENGGVSDGNQ* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0689 472 MobiDBLite consensus disorder prediction 443 472 - -
Vra5g0689 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 258 IPR000571 GO:0046872
Vra5g0689 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 416 440 IPR000571 GO:0046872
Vra5g0689 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 210 IPR000571 GO:0046872
Vra5g0689 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 369 394 IPR000571 GO:0046872
Vra5g0689 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 164 IPR000571 GO:0046872
Vra5g0689 472 SUPERFAMILY CCCH zinc finger 372 396 IPR036855 GO:0046872
Vra5g0689 472 MobiDBLite consensus disorder prediction 13 54 - -
Vra5g0689 472 ProSiteProfiles Zinc finger C3H1-type profile. 413 441 IPR000571 GO:0046872
Vra5g0689 472 MobiDBLite consensus disorder prediction 106 131 - -
Vra5g0689 472 Gene3D - 411 460 - -
Vra5g0689 472 Gene3D - 175 262 - -
Vra5g0689 472 MobiDBLite consensus disorder prediction 441 472 - -
Vra5g0689 472 SUPERFAMILY CCCH zinc finger 137 166 IPR036855 GO:0046872
Vra5g0689 472 SUPERFAMILY CCCH zinc finger 188 214 IPR036855 GO:0046872
Vra5g0689 472 SUPERFAMILY CCCH zinc finger 233 259 IPR036855 GO:0046872
Vra5g0689 472 ProSiteProfiles Zinc finger C3H1-type profile. 367 395 IPR000571 GO:0046872
Vra5g0689 472 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Vra5g0689 472 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Vra5g0689 472 SMART c3hfinal6 234 259 IPR000571 GO:0046872
Vra5g0689 472 SMART c3hfinal6 413 440 IPR000571 GO:0046872
Vra5g0689 472 SMART c3hfinal6 367 394 IPR000571 GO:0046872
Vra5g0689 472 SUPERFAMILY CCCH zinc finger 411 438 IPR036855 GO:0046872
Vra5g0689 472 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Vra5g0689 472 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Vra5g0689 472 PANTHER PROTEIN PHOSPHATASE RELATED 12 467 - -
Vra5g0689 472 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 12 467 - -
Vra5g0689 472 Gene3D - 323 402 - -
Vra5g0689 472 Gene3D - 114 174 - -
Vra5g0689 472 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Vra5g0689 472 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0689 Vra-Chr5 11076954 11081352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0689 363 462 C2H2 Transcription Factor Family AT3G02830 47.115 1.17e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra5g0689 zf-CCCH 6.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0689 - - gmx:100809906 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1623 7 34713090 34717431 Vra5g0689 5 11076954 11081352 PCT