Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0685 ATGGGTGGCGAGGAACATGGAGTTTCAGTTTGTGCTGCCTGCACCCACAACTGTCTATTGTTCCACCAAACCAAACAAACATCACCAACCTCTTTCTTCAAGTTCATCACTAGACAAGATTATTTAACAACTTTGTGTATTCCTCCTGCTTTTAGTGGTATTGTGGCCAGCATGGTTAATAAGAAAATCAATCTCAATGATTCAACTGGGCAGCAGTGGAAGGTTAAAGTATCAGAAGTTAATGGTTCATTTGCTTTTGGGGAGGGATGGAGTCTTTTTTCATCAGGTCATGGGCTTAAAGTTGGCTATCTTTTGGTACTCAATTACATTAAGGATTTGCACTTTGATGTCAAGATCTATGATACTTCTGCCTGTGAAAAGCTTGGTCTTCCTAGAAAAAGAAATCAGAAGAAAAGAAGCAGGAGCAAAATTGGCTCACCAGTTAGAGATAGTATCTTGGTCAGACAAGAACTCGATGCGCCAAGGCAGTGCAGCAAGTTTGACTTAGTAGTACCACAAAAGGCTAAAGAGAATGGCCAAGATGTGCTCATACTAGATCACAGTGAAGAAGACCCATGTCATTCAAAAAGCCTAGAATTTGACCAGAGCCATGGGGATGATGGGACCATGAAAAGTCAGAACGGAGATTTAATAGTTTCTAATGTTGATTATGAATCCAATATCGTTGAAAACGATGCAATGATACGCAGTAAGAATACTATGCTTGAAGGGGTCTTGAGTACTGAAGTTGCCTTGGATATATCTGAACCTCTAGAGGCAGACACATATACATATGACAAGACTTTAGATTCGAAAATTGAAGAGAACAAAGCCATCTTGTCCAACAGGGAAGCTCAAGAGTGCCAATTTTCCAAGGGCTTAGGTGAAATGAAGAAATTGCCCGTGGACATGAATCCCAACTTGGGCAGCTCCATGGATGAATTTCATTTAACAGGTGAAGTGTCTAAAAAGTTGAAGAAAGAGCTTGTAACTCTCAATGAAATGGAAGCAACAGGATTGCCCAAGGAAATCAACGGACTGTTGGACTCTGACATATTTAATGAAGATAATGCGAGTCACTTTAAAACTACACACGTCTCCTGTGTGGTTCCTCATGATAACGTTTTCCTTGAATTGCCCTCATGCCTGCCTTTGATTCGCAAGGTAAAGGTAGATCAGCAAAGGAAGATGCTAGTATTTCTTCGGGATCCACTGAGGAGATTGTGGCCGGTCTATTATCATGAAAAACCACATTTGAAATTACTGGCACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAGCCAAAAGATGAGTGTATTTTTGAGACTGAGGTTGATCCTGAGTGCAAGTCTAAACGTATCTTATCTGTTCAGATAGTCCACAACAAGTGA 1398 0.4049 MGGEEHGVSVCAACTHNCLLFHQTKQTSPTSFFKFITRQDYLTTLCIPPAFSGIVASMVNKKINLNDSTGQQWKVKVSEVNGSFAFGEGWSLFSSGHGLKVGYLLVLNYIKDLHFDVKIYDTSACEKLGLPRKRNQKKRSRSKIGSPVRDSILVRQELDAPRQCSKFDLVVPQKAKENGQDVLILDHSEEDPCHSKSLEFDQSHGDDGTMKSQNGDLIVSNVDYESNIVENDAMIRSKNTMLEGVLSTEVALDISEPLEADTYTYDKTLDSKIEENKAILSNREAQECQFSKGLGEMKKLPVDMNPNLGSSMDEFHLTGEVSKKLKKELVTLNEMEATGLPKEINGLLDSDIFNEDNASHFKTTHVSCVVPHDNVFLELPSCLPLIRKVKVDQQRKMLVFLRDPLRRLWPVYYHEKPHLKLLAHGWLDFSRANNIQPKDECIFETEVDPECKSKRILSVQIVHNK* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0685 465 SUPERFAMILY DNA-binding pseudobarrel domain 26 125 IPR015300 -
Vra5g0685 465 CDD B3_DNA 361 444 IPR003340 GO:0003677
Vra5g0685 465 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Vra5g0685 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 463 IPR044837 -
Vra5g0685 465 ProSiteProfiles B3 DNA-binding domain profile. 399 465 IPR003340 GO:0003677
Vra5g0685 465 SUPERFAMILY DNA-binding pseudobarrel domain 391 445 IPR015300 -
Vra5g0685 465 SMART B3_2 365 460 IPR003340 GO:0003677
Vra5g0685 465 SMART B3_2 32 123 IPR003340 GO:0003677
Vra5g0685 465 CDD B3_DNA 31 121 IPR003340 GO:0003677
Vra5g0685 465 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Vra5g0685 465 Gene3D - 23 125 IPR015300 -
Vra5g0685 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS02G0598200-LIKE 10 463 - -
Vra5g0685 465 MobiDBLite consensus disorder prediction 193 212 - -
Vra5g0685 465 Gene3D - 350 465 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0685 22 126 B3 DNA Binding Superfamily AT4G01580 31.250 3.31e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra5g0685 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0685 - - vra:106761496 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0685 5 10961474 10964901 Vra5g0685 5 10961474 10964901 ECH