Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0663 ATGGAGAACAACCAGCAAGGGGGCCAAGGGCAATCGGGAGCGTACCCCGGCGCAGCGCCCGGAAGTGCAGGTGCAGGTGCAGGAGCGCCACCCTTTCAGCACCTCCTCCACCAGCAGCAGCAGCAGCTGCAGATGTTCTGGTCCTACCAGCGTCAAGAGATCGAGCACGTCAACGACTTCAAGAACCACCAGCTGCCCCTCGCTCGCATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGCATGATCTCCGCAGAGGCCCCAATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATCACCCGCACCGACATTTTCGACTTCCTTGTTGACATCGTTCCTCGCGACGAGATCAAGGACGATGCCGCTCTCGTTGGGGCTACCGCTAGTGGTGTGCCTTACTATTACCCTCCCATTGGCCAGCCTGCCGGCATGATGATTGGCCGTCCCGCCGTTGATCCCGCCACCGGAGTCTACGTCCAGCCCCCGTCTCAGGCCTGGCAGTCTGTCTGGCAGTCCGCTGCCGACGATGCGTCGTACGGTGGCGCAGGCGGAGCCGGTGCGCAGGGGAGCATTGATGGCCAGAGCTGA 672 0.6265 MENNQQGGQGQSGAYPGAAPGSAGAGAGAPPFQHLLHQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAADDASYGGAGGAGAQGSIDGQS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0663 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 223 - -
Vra5g0663 223 Pfam Core histone H2A/H2B/H3/H4 53 127 IPR007125 GO:0003677
Vra5g0663 223 Gene3D Histone, subunit A 31 142 IPR009072 GO:0046982
Vra5g0663 223 MobiDBLite consensus disorder prediction 1 31 - -
Vra5g0663 223 SUPERFAMILY Histone-fold 39 136 IPR009072 GO:0046982
Vra5g0663 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0663 Vra-Chr5 10413588 10418585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0663 3 202 CCAAT-HAP5 Transcription Factor Family AT3G48590 77.512 1.68e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra5g0663 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0663 - - gmx:100783316 337.421