Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0655 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATATGGATAAGGCTTCCATACCCAACATAGACTCGATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGAGAGTTTTCTGTGGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCAGCATTAGCCAAGTTCAAAGATGTTGCTGCTGGTGCTGGAGTCTCCAAAGTGGCTTCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTGTCATGCCTTGTGGACGGGTGCAATTCTGATCTTAGCAACTGTAGAGATTATCATAGGCGACACAAGGTGTGTGAACTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTTCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAGCGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCACACCCGACCTGGTAGTTTTTTATCGAATTACCAAGATTTTTCAGGTACTCAGTTGCTACCATTCTCAAATCCACACGTGTATCCTTCCAGTGCCATGATGAGCACCCCTTGGAGTGGAGGGCTTGTGACTTCCTCTGCAGATGCTAGGTTGCACAACCAGCACCACCATCAAGAGCTATTTCTAGGATCTTCTCAGAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACCATCCCTCCACAGGTGCACTGAGCAACCAAAGCCTTCCCTTTCCGTCTCCTTCTGTGTGCCACACGCTTCTGAGGAGCAGCCCTTTATCAGAAAGTTGTGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTGAATCAAATGGTGCAGGCACCGTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGTCTGCAGGATAACAGCAACTTAGAGTCTGTGGAGCGAGTGTTGGTTCCCAATGGGAGTGACCACTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGAAGCCCCTCAACTGTTCCCCTTTCAATGGGAATAG 1173 0.4825 MDWNLKAPSWDLVDMDKASIPNIDSMEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESALAKFKDVAAGAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPHTRPGSFLSNYQDFSGTQLLPFSNPHVYPSSAMMSTPWSGGLVTSSADARLHNQHHHQELFLGSSQKEGKQVAFLHGNHPSTGALSNQSLPFPSPSVCHTLLRSSPLSESCGARSKMFCESLTTTNSVHDTPCALSLLSSSQTHTPGNGLNQMVQAPSMSLMQPLGLSLQDNSNLESVERVLVPNGSDHCSSMYSLGSDGSHCNEAPQLFPFQWE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0655 390 Gene3D - 89 158 IPR036893 GO:0003677|GO:0005634
Vra5g0655 390 MobiDBLite consensus disorder prediction 159 173 - -
Vra5g0655 390 MobiDBLite consensus disorder prediction 158 183 - -
Vra5g0655 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 390 IPR044817 GO:0003677
Vra5g0655 390 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Vra5g0655 390 Pfam SBP domain 97 170 IPR004333 GO:0003677
Vra5g0655 390 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Vra5g0655 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 6 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0655 Vra-Chr5 10225983 10230246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0655 1 390 SBP-box Gene Family AT5G50670 40.299 3.23e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra5g0655 SBP 3.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0655 - - gmx:100787407 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3469 7 54071822 54075340 Vra5g0655 5 10225983 10230246 PCT