Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0651 ATGGAGAAACACCAAGTTATGCTCCATACCGCATCTACATCAACAGCTTTATCATCTCATTTTAAAGATGTTGAGAAACAGGTTTCAGAGATATCATCTCAGAACCAAAGTGACAAGGAAGCTAAGCACCACCGATATGCATTTCAAACCAGAAGCGCTGTTGATGTTCTGGATGATGGCTACCAGTGGAGAAAATATGGGAAAAAGATAGTCAAAAACAATACTTTTCCAAGAAGTTACTACAAGTGTGCTCATCGAGAGTGCAATGTTAAGAAACAAATCCAGCGCCATTCCAGCGATGAAGAGATCGTGGTCACAACCTACGAAGGGACGCATACACACCCTGTGGATAAGTCAGTGGAAACCTTCGACCAGATCTTGGGCAACCTACTCATAGGCAACCTATTCAATAATGCACCTCCCACATTGGAATAG 435 0.4253 MEKHQVMLHTASTSTALSSHFKDVEKQVSEISSQNQSDKEAKHHRYAFQTRSAVDVLDDGYQWRKYGKKIVKNNTFPRSYYKCAHRECNVKKQIQRHSSDEEIVVTTYEGTHTHPVDKSVETFDQILGNLLIGNLFNNAPPTLE* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0651 144 Pfam WRKY DNA -binding domain 58 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0651 144 SMART WRKY_cls 57 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0651 144 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 1 133 - -
Vra5g0651 144 SUPERFAMILY WRKY DNA-binding domain 49 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g0651 144 ProSiteProfiles WRKY domain profile. 52 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0651 144 Gene3D WRKY domain 41 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g0651 144 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 133 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0651 Vra-Chr5 10149676 10153071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0651 45 136 WRKY Transcription Factor Family AT5G13080 65.217 6.84e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g0651 WRKY 2.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0651 - - var:108331379 243.432