Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0643 ATGGCCAAAACGGAGATGTCTAGAACCGAACTCAATGTAAAGCAAGGAGAACCAACACGAGTTCAGCCTGCAGAAGAAACAGAAAAAGGACCTTACTTCCTTTCAAATCTTGACCAGAACATTGCTGTTCCTGTGCGCACGGTGTACTGCTTCAAATCTGCTTTCAGAGGAAACGAGGATGCTGCACAAATTATCAAGGATTCCTTGTCGAAGATTCTTGTCCCTTATTACCCCATGGCAGGCACGCTGTCTATAAGCTCGGAAGGGAAGTTGATAGTGCATAATCCTGGGGAGGGTGCATTGTTTGTGGAGGCTGAAGCAAATTGTGACATCGAAGAGATAGGAGACTTGACAAAACCAGACCCTCGTACTCTTGGGAAACTGGTTTACAATGTTCCTGGTGCACGAAACATTCTTGAGATGCCTCTTATGACTGTTCAGGTGACAAAGTTCAAATGCGGAGGTTTTACTTTGGGGCTTTGCATGAACCACTGCATGAAAGATGGACTATGTGCCATGGAGTTTGTGAATGCATGGAGTGAGACAGCTCGAGGTTTAGACTTAAAGATCCCACCATTTCTTGATCGAACTATAATCAAAGCACGTGATCCTCCCAAAGTAGAGTTCAAACACACCGAATTTGACGAAATAGAGGATGTGTCAGAGACTAGAAAGCTTTATGAGGAAGAAAACATGCTCTACAGATCCTTCTTCTTCGATCCTGAGAAGCTCGATCTACTTAAGAAAAAGGTGACAGAAGACGGAGTTTTGAGCAAGTGCTCAACTTTTGAAGCGCTCTCAGCGTTTGTGTGGAGAGCTCGAACTGCAGCATTAAGGATGCAACCTGAGCAACAAACAAAGCTTCTCTTTGCAGTTGATGGAAGGTCAAGATTCGTTCCCCCAATACCAAAAGGGTACTTTGGCAATGCTATTGTGTTGACAAATTCGTTGTGTGAGGCTGGGGAGTTATTGAGGAACCCTTTGTCATATTCCGTGGGATTGATTCGCAAGGCAATTGACATGGTTACTGATAGTTACATGAGATCTGCCATTGACTATTTTGAAGTCACAAGAGCTAGGCCATCTCTAACAGCCACCCTTTTGATCACAACTTGGACTAAGTTGTCTTTCCACACCACAGATTTTGGCTGGGGTGAACCTCTATGTTCTGGTCCTGTCACTCTGCCAGAGAAAGAAGTCATTTTGTTTTTATCACATGGTCAAGAAAGGAAAAACGTAAATGTTCTTCTGGGGTTGCCCAAGTCTGCCATGGAAATTTTTGAAGATTTGTTGATGCAGGTGTGA 1305 0.4391 MAKTEMSRTELNVKQGEPTRVQPAEETEKGPYFLSNLDQNIAVPVRTVYCFKSAFRGNEDAAQIIKDSLSKILVPYYPMAGTLSISSEGKLIVHNPGEGALFVEAEANCDIEEIGDLTKPDPRTLGKLVYNVPGARNILEMPLMTVQVTKFKCGGFTLGLCMNHCMKDGLCAMEFVNAWSETARGLDLKIPPFLDRTIIKARDPPKVEFKHTEFDEIEDVSETRKLYEEENMLYRSFFFDPEKLDLLKKKVTEDGVLSKCSTFEALSAFVWRARTAALRMQPEQQTKLLFAVDGRSRFVPPIPKGYFGNAIVLTNSLCEAGELLRNPLSYSVGLIRKAIDMVTDSYMRSAIDYFEVTRARPSLTATLLITTWTKLSFHTTDFGWGEPLCSGPVTLPEKEVILFLSHGQERKNVNVLLGLPKSAMEIFEDLLMQV* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0643 434 MobiDBLite consensus disorder prediction 1 27 - -
Vra5g0643 434 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 12 431 - -
Vra5g0643 434 Gene3D - 215 434 IPR023213 -
Vra5g0643 434 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 431 - -
Vra5g0643 434 Pfam Transferase family 16 429 - -
Vra5g0643 434 Gene3D - 7 214 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0643 Vra-Chr5 9934345 9942325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0643 10 434 Monolignol Biosynthesis Gene Families AT5G48930 36.054 9.19e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0643 K15400 - gmx:100794490 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0643 5 9934345 9942325 Vra5g0643 5 9934345 9942325 ECH