Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0634 ATGGAATCGTCACCGTCGTCTTCGTCTTCGTCCTCGTTGTCGTCGTCTTCTGGAAGCGATGCCGGCGGTGGTGGCGCTGTCACGTGGTTCGGGATGAGTTTCCCGTTCCGTTCCCCGCTTTCTCTCGTGATGGATTACTGCACGCGCGAGGATTCCGCGGAGCCCGTGATTATCATTCCCCGGACGCGCCCGCGGTTTCAGGCGCCGACTGAATCTTCTGCTTCTGTTTCGGCCTCTGACTCTGGCGATAATGCGTGCGGCGGGGCTGAGGAGGTTGCGATACGCATCATTGGGGCCGGCGAGCAAGAGAGCGGTTCTTCGCCGTCGTCATCGAGGAGCCGCGCTGGGGAACAGGGATGTGAGGAGGCGGCGGTGGTTGGGAGGAGCGGGATGCTATCGTCGGAGGCTCGCCGGCGAATGGCTGAGGAGAGGGTGCCGTTGGTGTCTTTGGATGATGAGATTGGTGGCGGTAGGGATTCTTCTTCGTCTTCCTCTACCTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAACAGATTCTTCCGTTCTCCCTCTTGCTCTTGATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAAAAGCAGACTGCCTTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTATGCTGCATGTTATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGCTATGCTTCCCCCAAAGACAAGTCCACCTTTCTGGCATACAATATTCATCATTTTGGTTAACGATACATTGGTGCGGCAAGCAGCAATGGCTTTGAAGTGTTTATTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTTCGTCGGCAGGGTCAAATGTTAACTCTGATTGAGTACACTCTTCTGCTGTATCGTGCCTTGTTGCCAACACCTGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTGTTTTCCTCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCTTTATCAAAAAAGGAAGTACATTATGGGGTTTATGCTACAACAGAACAGGTGAGTGCCGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGACTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGGGAACGGACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTTCGGACCTTTGGAGATGGATCAACAAGTCTTTTTTTTCAGCTGTTTTAA 1386 0.4834 MESSPSSSSSSSLSSSSGSDAGGGGAVTWFGMSFPFRSPLSLVMDYCTREDSAEPVIIIPRTRPRFQAPTESSASVSASDSGDNACGGAEEVAIRIIGAGEQESGSSPSSSRSRAGEQGCEEAAVVGRSGMLSSEARRRMAEERVPLVSLDDEIGGGRDSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVICIYWWYRNDDLLYPLAMLPPKTSPPFWHTIFIILVNDTLVRQAAMALKCLLLIYYKNGRGHNFRRQGQMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVSAAGDMCAICQEKMQTPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0634 461 ProSitePatterns Zinc finger RING-type signature. 415 424 IPR017907 -
Vra5g0634 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 448 IPR013083 -
Vra5g0634 461 MobiDBLite consensus disorder prediction 99 120 - -
Vra5g0634 461 Pfam Zinc finger, C3HC4 type (RING finger) 398 441 - -
Vra5g0634 461 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g0634 461 MobiDBLite consensus disorder prediction 66 82 - -
Vra5g0634 461 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 461 IPR044235 GO:0061630|GO:1904294
Vra5g0634 461 ProSiteProfiles Zinc finger RING-type profile. 400 438 IPR001841 -
Vra5g0634 461 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 461 - -
Vra5g0634 461 SUPERFAMILY RING/U-box 390 443 - -
Vra5g0634 461 MobiDBLite consensus disorder prediction 102 116 - -
Vra5g0634 461 MobiDBLite consensus disorder prediction 62 86 - -
Vra5g0634 461 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g0634 461 CDD RING-HC_RNFT1_like 399 438 - -
Vra5g0634 461 SMART ring_2 400 437 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0634 Vra-Chr5 9674548 9682390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0634 61 461 C3H Transcription Factor Family AT5G01960 66.914 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0634 - K22379 gmx:100784614 778.859