Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0632 ATGGGGAGAAGGCCTGCAAGGTGTTATCGGCAGATAAAGAACAAACCATACCCCAAGTCACGCTTCTGTCGTGGCGTTCCTGATCCTAAAATCAGAATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAATTTCCTTTCTGCGTCCATTTGGTTAGCTGGGAAAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGAATTGCATGCAACAAATATATGGCAAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCGTTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCATTCGGAAAGCCACTGGGTACATGTGCTAGAGTGGCCATTGGCCAGGTCCTTCTTTCAGTCCGCTGTAAGGACAGCAACAGTCATCATGCACAGGAGGCCCTTCGTCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTTCTGATTATCTCAAGTACAAGTCAGAGAACAGGATTGTGCCTGATGGTGTGAATGCTAAGCTTCTTGGGTGCCATGGACCACTGGCAAATCGTCAACCTGGAAGTGCTTTTCTGACGAGTGCTACTGCTTAA 666 0.458 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSDYLKYKSENRIVPDGVNAKLLGCHGPLANRQPGSAFLTSATA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0632 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vra5g0632 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vra5g0632 221 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Vra5g0632 221 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vra5g0632 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vra5g0632 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vra5g0632 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vra5g0632 221 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vra5g0632 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0632 Vra-Chr5 9619632 9622188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0632 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.727 3.09e-147 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0632 K02866 - gmx:100815571 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0969 6 10927369 10929188 Vra5g0632 5 9619632 9622188 PCT