Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0630 ATGAAGTCGCAGTTCTCTATTGTTGCAATTATTCTATTAGGCTCCACACTGTCTTTCTGTGGCATGATTGTAGCTGACTTGAAGTCTGACAAAGAAGCTCTGTTGGAGTTTGCTTCAAGTGTCCTACATGCCCCAAGACTCAACTGGAAGAATGACTCTGCCTCAATTTGCAACTCATGGGTTGGTGTGACATGCAACTCAAATGGCACACGTGTCATAGGCCTTCACCTTCCAGGAATGGGATTAACTGGGACCATTCAAGAGAACAGCATAGGAAAACTAGATGCTCTTAGGGTCCTCAGTCTTCATTCCAATGGTCTCAGAGGAAATCTTCCTTTTAACATCCTCTCTATTCCTTCACTCCAATTTGTATACCTTCAGCACAATAACTTCTCTGGTTCAATTCCTTCTCCTGTGTCCCCTAAACTCTTTGCATTGGATATCTCCTGTAACTCATTTTCTGGCAGCATCCCACCTGCAATTCAGAACCTCAGAAGACTCGCTTGGTTGTATCTCCAAAACAATTCCATATCTGGGGCAATTCCTGACTTCAACCTTCCAAGTCTCAAACATTTGAACTTGAGTTATAATAACTTCAATGGCTCAATTCCAAATTCCATAAAGACATTCCCTTATTCTTCTTTTGTCGGTAACTCTCTCTTATGTGGGCCACCACTAAATGATTGCTCTACAATCTCCCCTTCTCCATCTGCTTCCACTGATGCTTACCAGCCACTCACCCCACCTACCATCCAAAACCAAAAGGGTACCAACCATAAGAAAAGCTTTGGCCTGGCTCCTATTCTTGCTCTAGTCATTGGGGTCTTTGCCTTCCTCTCTCTGCTAGTTGTAGTGATCTGTGTGTTCTGTTTGAAGAGGAAGAAGAACAGTACAAGCAGTGGCATACTGAAAGGAAAGGCTTCGTGTGCTGGAAAGACAGAGGTTTCAAAGAGTTTCGGAAGTGGTGTGCAAGGGGCCGAAAAAAACAAACTATATTTCTTTGAAGGTTCCTCTTCAAGCTTTGACCTTGAGGATTTGTTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGTTATGGAACAGCATATAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAAAAGGAGTTTGAGCAGCATTTGGAGATTGTGGGGAAATTTGGAAGCCACCCAAATGTGATGCCCCTAAGGGCTTATTACTATTCCAAAGATGAAAAACTTCTGGTTTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCACGGAAACAGAGGTGCTGGAAGAACCCCACTTGACTGGGATTCCAGAGTGAAGATTTTGCATGGAGCAGCCAAGGGAATTGCTTTCATCCACTCAGAGGGAGGTCCAAAATTCACACATGGGAACATCAAGTCAAACAATGTGCTGATAACCCAAGAACTAGAAGGCTGCATCAGTGACGTTGGATTGCCACCTCTAATGAACACCACCCCAGCAACCATGTCTAGAGCCAATGGATATAGAGCTCCAGAAGTCACAGACTCAAAGAAGATCACTCAGAAGTCTGATGTATACAGCTTTGGGGTAGTGCTGCTGGAAATGCTGACAGGGAAGACCCCACTGAGGTATCCAGGGTATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTAGGGAGGAATGGACAGCAGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAGTACGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTGGCATGTGTAGCTAAGGGCTCAGAAAATAGGCCTAGAATGGATGAAGTTGCTAGAATGATTGAGGAAATTAAGCATCCTGAGTTGAAGAACCGACCATCTTCTGAGTCTGAATCTAATGTGCAAACACCATGA 1923 0.4436 MKSQFSIVAIILLGSTLSFCGMIVADLKSDKEALLEFASSVLHAPRLNWKNDSASICNSWVGVTCNSNGTRVIGLHLPGMGLTGTIQENSIGKLDALRVLSLHSNGLRGNLPFNILSIPSLQFVYLQHNNFSGSIPSPVSPKLFALDISCNSFSGSIPPAIQNLRRLAWLYLQNNSISGAIPDFNLPSLKHLNLSYNNFNGSIPNSIKTFPYSSFVGNSLLCGPPLNDCSTISPSPSASTDAYQPLTPPTIQNQKGTNHKKSFGLAPILALVIGVFAFLSLLVVVICVFCLKRKKNSTSSGILKGKASCAGKTEVSKSFGSGVQGAEKNKLYFFEGSSSSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQHLEIVGKFGSHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKILHGAAKGIAFIHSEGGPKFTHGNIKSNNVLITQELEGCISDVGLPPLMNTTPATMSRANGYRAPEVTDSKKITQKSDVYSFGVVLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGSENRPRMDEVARMIEEIKHPELKNRPSSESESNVQTP* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0630 640 Gene3D Phosphorylase Kinase; domain 1 314 423 - -
Vra5g0630 640 PANTHER OS05G0588300 PROTEIN 4 639 - -
Vra5g0630 640 SUPERFAMILY Protein kinase-like (PK-like) 352 620 IPR011009 -
Vra5g0630 640 ProSiteProfiles Protein kinase domain profile. 348 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0630 640 PANTHER RECEPTOR-LIKE KINASE 4 639 - -
Vra5g0630 640 ProSitePatterns Protein kinases ATP-binding region signature. 354 385 IPR017441 GO:0005524
Vra5g0630 640 Gene3D Ribonuclease Inhibitor 90 234 IPR032675 -
Vra5g0630 640 Gene3D Ribonuclease Inhibitor 23 89 IPR032675 -
Vra5g0630 640 Pfam Protein kinase domain 352 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0630 640 Gene3D Transferase(Phosphotransferase) domain 1 424 638 - -
Vra5g0630 640 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Vra5g0630 640 MobiDBLite consensus disorder prediction 620 640 - -
Vra5g0630 640 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vra5g0630 640 SUPERFAMILY L domain-like 55 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0630 Vra-Chr5 9603514 9607864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0630 2 638 Receptor kinase-like Gene Family AT5G58300 58.385 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra5g0630 Pkinase 2.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0630 - - gmx:100818444 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0970 6 10934367 10938545 Vra5g0630 5 9603514 9607864 PCT