Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0624 ATGGAGAAGGAACTGGTGGAATTGTATGACGCTGCGAAGAAGGCGGCGGATGCGGCCCTCTCCGGCGACGCTGAGCACGAGGAGAGCCGATGCATCGATGCCCTGGAACAGCTTAAGAAATTTCCCGTTAATTATAAGATTCTTGTTAACACTCAGGTAGGGAAACATCTTAAAGTTCTCACAAAGCACCCAAGGCAGACAATTCGGGCTTTTGCTGTTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAAAACGGGGGTGCTGATGGTAAGGTTGAATCAGCTAATGGGGATAGATCTAAACCTGGGAAAATGCAGAAAAGTCCTTCGGTGAAAGTTGAAAAAGGTGAAACTGTCAAGGCTGAGAGAAATGATAGGAATGGTACATCAAAGTCAGAAAGTATGAAGAAGGCACAAAATGATGTCAAGAATGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGTCAGCCAAGGAGGTAAAGCCATTTTCTGGAACAAAGAAATTTTCATCCAGTTCTGCAACTCCCCCAAAGCTAACAACTATGATCAAATCTAATGACGCAACGCGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTGTCCAAGGTCTCTGGGGAGGCTGATGAAGATCTTGTAGAGATTGTCAATGCTTCTGATCCTATTCGAGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCAAATGGAGCGCAGAAAGTCAAGTACAGGTCCTTAATGTTTAATCTTAAGGATTCAAATAACCCTGATTTCCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCTGAGCAACTGATCAACATGACCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAAAATCAGAAAATCACTGAGAAAGCTTTGTTTGAATGTGAACGTGGAATGCAACCGAAAGCTACAACCGATCAATTTAAGTGTGGCCGATGTGGTCAAAGAAAATGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1101 0.4305 MEKELVELYDAAKKAADAALSGDAEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQTIRAFAVDLIEIWKGIIIKETSKNKNGGADGKVESANGDRSKPGKMQKSPSVKVEKGETVKAERNDRNGTSKSESMKKAQNDVKNEKTDRAASVKVEKSAKEVKPFSGTKKFSSSSATPPKLTTMIKSNDATRDKIRELLHEALSKVSGEADEDLVEIVNASDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMTSAEMASEQRKQENQKITEKALFECERGMQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0624 366 MobiDBLite consensus disorder prediction 89 162 - -
Vra5g0624 366 Gene3D - 175 294 IPR036575 GO:0006351
Vra5g0624 366 CDD TFIIS_I 23 83 - -
Vra5g0624 366 ProSiteProfiles TFIIS central domain profile. 198 321 IPR003618 GO:0006351
Vra5g0624 366 SUPERFAMILY Elongation factor TFIIS domain 2 182 296 IPR036575 GO:0006351
Vra5g0624 366 Pfam Transcription factor S-II (TFIIS), central domain 195 312 IPR003618 GO:0006351
Vra5g0624 366 ProSiteProfiles Zinc finger TFIIS-type profile. 324 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vra5g0624 366 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 97 IPR035441 -
Vra5g0624 366 Pfam Transcription factor S-II (TFIIS) 326 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vra5g0624 366 SUPERFAMILY Zinc beta-ribbon 306 364 - -
Vra5g0624 366 ProSitePatterns Zinc finger TFIIS-type signature. 328 363 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vra5g0624 366 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 366 - -
Vra5g0624 366 PIRSF TFIIS 2 366 IPR035100 -
Vra5g0624 366 SMART TFS2_5 8 85 IPR003617 GO:0005634
Vra5g0624 366 CDD Zn-ribbon_TFIIS 319 365 - -
Vra5g0624 366 SMART mid_6 196 304 IPR003618 GO:0006351
Vra5g0624 366 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 366 - -
Vra5g0624 366 SMART Cys4_2 326 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vra5g0624 366 Gene3D - 295 366 - -
Vra5g0624 366 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Vra5g0624 366 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 96 IPR035441 -
Vra5g0624 366 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Vra5g0624 366 TIGRFAM TFSII: transcription elongation factor S-II 14 366 IPR006289 GO:0003676|GO:0005634|GO:0006368
Vra5g0624 366 MobiDBLite consensus disorder prediction 115 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0624 Vra-Chr5 9482319 9486202 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vra5g0624 TFIIS_M 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0624 K03145 - gmx:100811982 638.262