Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0623 ATGAACAAGACCCTCGTCACAGAGCTTCTTCTCGGTCTCGACTATGCCACTCAGCTCAAGTTCTTGCTTCAGAAACCTGTTGACCCAGATGCCTCTGTTGCAGCTAAGGAACTAGTTACCAATGTGCACAGATCTTTCGCTCAAACTCTCTCTATCTTGACTTCTTCCCACCCTGCCAGGGTTCAAGACCAGGTTGCTCAGAATCTCCTGATTTCTGGGGAAGATGCCTCGCAGGCTGCAAGCATTGATCACAGGTCTCACGATTCAACTGAGAGTAGAAAGAGATCGTTTCCCCTCTCAAAGGATCGCAGAGGTTCCTACAAAAGAAGGAAGACTGAACAGACATGGACCATAGTTTCCCACACTACTGATGATAATCATGCGTGGAGAAAGTACGGACAGAAGGATATTCTAAATTCTCAGTTTCCCAGGAGTTACTTCAGATGTACTAGGAAGTTTGAACAAGGTTGCAAAGCCACCAAACAAGTGCAACGGTTAGAAGAGAATCCTGATATGTACAATATTACGTACATTGGGTTTCACACATGCAAAGACATCCTCAAGGCTCCACAAATGGTCACATGTTCTGAAACTTGGGACTCCTTTCTTGAGAATTCCCATGAAGACTTCAATGTTCCAAATGAACAAAAGCAACACGATCCTCCTATGAGATCACAAAGCCCAATTGTTAAACAAGAATGTCTCAATGATGAGACTGATCCCAGTGATCTTACAGATGCCAACCTGTGGTCTGAATTGAAGGATTTTGAACTGTCCAATGAAAAGCCTGCCTTGAAAATATCATCTGAAAATGCAGAGCATTCATGTACTTGCTCTCGGAGTTTGGACATGAATTTTGATGCGTTTTCTCATCATTAG 879 0.4346 MNKTLVTELLLGLDYATQLKFLLQKPVDPDASVAAKELVTNVHRSFAQTLSILTSSHPARVQDQVAQNLLISGEDASQAASIDHRSHDSTESRKRSFPLSKDRRGSYKRRKTEQTWTIVSHTTDDNHAWRKYGQKDILNSQFPRSYFRCTRKFEQGCKATKQVQRLEENPDMYNITYIGFHTCKDILKAPQMVTCSETWDSFLENSHEDFNVPNEQKQHDPPMRSQSPIVKQECLNDETDPSDLTDANLWSELKDFELSNEKPALKISSENAEHSCTCSRSLDMNFDAFSHH* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0623 292 Gene3D WRKY domain 108 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g0623 292 MobiDBLite consensus disorder prediction 76 113 - -
Vra5g0623 292 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 281 IPR044810 GO:0003700
Vra5g0623 292 SMART WRKY_cls 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0623 292 MobiDBLite consensus disorder prediction 80 113 - -
Vra5g0623 292 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 3 281 - -
Vra5g0623 292 ProSiteProfiles WRKY domain profile. 124 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0623 292 Pfam WRKY DNA -binding domain 124 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0623 292 SUPERFAMILY WRKY DNA-binding domain 120 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0623 Vra-Chr5 9449265 9451553 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0623 5 224 WRKY Transcription Factor Family AT3G56400 41.256 5.55e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g0623 WRKY 9.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0623 - - vun:114164744 489.96