Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0621 ATGGAAGAGGTAATTAACTCCATTCGACGCGCTTCTGAATTGGTTCAAAACCTTCAACAAGACCTACCCAACTTGGCCAACCAACCAGAGACGCTGTCCTTGTCCATTGATCAGATAACTCAGGCTTTCACTGATGCCAAGGAAAAGCTGTTGCTCATTTCCCGACACACCCAAACGTCGGAATCTCCTCCAATGTTGCTTCATGAAACCACACCCCAGCAGCCTCAGATGGATGCTACTCTGATACAGGAGTGGTTAAGGTCTAGTCATGCAGTAACCATGGATCAGATGTTTCAAATGCAACTTGCTTCAATGGCAGGGAGAGAGGTGGAAGATTCAGAGAGAACCATAGGATCTGAAGGAGATCAAGGGCAGGGAATCCACGCATCTTCTTCTCGACCACGAAGAAGAAGCAGGGAAGGAAATCAAGAGAAGAAGAAAATTCTGGTTCCTGCCCCACAGTTTGGAAACACAGAGATGCCACCGGAGGACGGTTTCACTTGGAGGAAATATGGACAGAAAGAAATACTTGGATCCAAATACCCAAGGAGTTACTACAGATGCACACATCAGAAGTTATATGAATGCCAAGCCAAGAAGATGGTGCAAAGACTTGATCACAATGCTAACATATTTGAGGTAACATACAGAGGGAAACACACATGCCATATGTCCTCCACAGCACCATCGTCAGTTCCCCCAGAACATATTTTGGTCGACATCACACAAAATACTAACACCATTTCCTCTCAATTGTCTCCGTCAGTCAATCTCACCCTCCATCCCGCTACTGCCACCGCCGCCACCACTAGTGCCAGGGGCGGACCCTCCACCTCAAGATACGCTGGTGATTATCCCGTCCTAGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGCGGCAACAACAGCATGGAATTTCTCTTCTCTCCCACTGAAGATAAAAGTGATGCAAATTGA 963 0.4694 MEEVINSIRRASELVQNLQQDLPNLANQPETLSLSIDQITQAFTDAKEKLLLISRHTQTSESPPMLLHETTPQQPQMDATLIQEWLRSSHAVTMDQMFQMQLASMAGREVEDSERTIGSEGDQGQGIHASSSRPRRRSREGNQEKKKILVPAPQFGNTEMPPEDGFTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKMVQRLDHNANIFEVTYRGKHTCHMSSTAPSSVPPEHILVDITQNTNTISSQLSPSVNLTLHPATATAATTSARGGPSTSRYAGDYPVLDMADAMFNSGSSSGNNSMEFLFSPTEDKSDAN* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0621 320 Gene3D WRKY domain 152 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g0621 320 PANTHER WRKY TRANSCRIPTION FACTOR 55 1 249 - -
Vra5g0621 320 Pfam WRKY DNA -binding domain 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0621 320 Coils Coil 1 28 - -
Vra5g0621 320 MobiDBLite consensus disorder prediction 105 148 - -
Vra5g0621 320 ProSiteProfiles WRKY domain profile. 163 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra5g0621 320 SUPERFAMILY WRKY DNA-binding domain 159 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra5g0621 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 249 IPR044810 GO:0003700
Vra5g0621 320 SMART WRKY_cls 162 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0621 Vra-Chr5 9437323 9440504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0621 1 317 WRKY Transcription Factor Family AT2G40740 39.755 6.76e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra5g0621 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0621 - - pvu:PHAVU_009G043200g 526.939