Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0618 ATGGCTGCACCTTCTTCTTCAATGCACCAACATGATCTTCCTCATGTTTTGGCCGTCGACGACAACCTTATTGATCGAAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGTGGACAGAACAGCATGAACGGTAGATCCAAAGTAAATTTGGTAATCACAGACTATTGCATGCCAGGAATGACAGGCTATGAGCTACTTAAGAAAATTAAGGAATCATCTGTAATGAAGGAGGTTCCTGTAGTGATAATGTCTTCTGAGAACATACCGACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCTTAAAGCCCCTCAAACAATCTGATGTAAAGAAACTGACATGTCAGTTAATGAATTGA 432 0.4144 MAAPSSSMHQHDLPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNSMNGRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVKKLTCQLMN* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0618 143 Pfam Response regulator receiver domain 16 136 IPR001789 GO:0000160
Vra5g0618 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 142 IPR045279 GO:0009736
Vra5g0618 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 5 142 - -
Vra5g0618 143 CDD REC_typeA_ARR 16 137 - -
Vra5g0618 143 SMART REC_2 14 138 IPR001789 GO:0000160
Vra5g0618 143 Gene3D - 15 143 - -
Vra5g0618 143 ProSiteProfiles Response regulatory domain profile. 15 142 IPR001789 GO:0000160
Vra5g0618 143 SUPERFAMILY CheY-like 14 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0618 Vra-Chr5 9332686 9333984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0618 15 143 Response Regulator Gene Family AT3G56380 74.809 2.85e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra5g0618 Response_reg 1.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0618 K14492 - gmx:100499827 262.692