Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0615 ATGAAACATTTTCAGCATAAGGGTTTGAAGTCTCATGAAGGTGAATGTTCAAATTCTGATAAAATAATGGTGATAGATTTCATGAAGATGTCAAAGAATGATGATAGTATTCAAGATTCATCGAAGAAGAATGAAACAATCGATTCATCTATTTCTTACATTAAAGATGGAGATAAGAAGAATGCAAATATGAAAGAAGGAAAGATTTTTTGTTGCAACTATTGTAAGAAAGAGTTTTCTAGCTCACAAGCTTTGGGAGGACACCAAAACGCACACAAACAAGAACGAGCTATGGCAAAACTTGTTGAAGGTTTTAATCCTTATTACTCTTATTATTCAAATTTGTATAACTCTCATCATTCTCTTTACGGAGGGTCTCTTAATAGAGCACTTGGGGTTAGAAAAGATTCCATGATTCAAAAGCTTTCTTGGACTTCAAGATATGAATATTCATTGTTTAAAAGGGATCATGGAACGTCAATATTTGATGGGTTCGAAATTATGAAGAGTGATCACAATGATAAAACCATTCTTCAAACACTTCCTCTTTTTACAAATGATGCTAACACTTCATCAATCAAACTTCAAAAGAAGACAATGGTTATATCAACAAATATTGTTGATCATTCTGTTCGAGAACAAACTTCCAATGAAACATCTTGTAATCTTGATTTGTCCCTCAAATTGTAG 690 0.3217 MKHFQHKGLKSHEGECSNSDKIMVIDFMKMSKNDDSIQDSSKKNETIDSSISYIKDGDKKNANMKEGKIFCCNYCKKEFSSSQALGGHQNAHKQERAMAKLVEGFNPYYSYYSNLYNSHHSLYGGSLNRALGVRKDSMIQKLSWTSRYEYSLFKRDHGTSIFDGFEIMKSDHNDKTILQTLPLFTNDANTSSIKLQKKTMVISTNIVDHSVREQTSNETSCNLDLSLKL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0615 229 Gene3D Classic Zinc Finger 42 104 - -
Vra5g0615 229 Pfam C2H2-type zinc finger 70 94 - -
Vra5g0615 229 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 149 - -
Vra5g0615 229 SUPERFAMILY beta-beta-alpha zinc fingers 67 97 IPR036236 -
Vra5g0615 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Vra5g0615 229 PANTHER ZINC FINGER PROTEIN JAGGED 11 149 IPR045320 GO:0003700
Vra5g0615 229 ProSitePatterns Zinc finger C2H2 type domain signature. 71 92 IPR013087 -
Vra5g0615 229 Coils Coil 227 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0615 Vra-Chr5 9162364 9163053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0615 63 229 C2H2 Transcription Factor Family AT5G01860 34.682 2.30e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g0615 zf-C2H2_6 6.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0615 - - var:108320958 322.398