Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0611 ATGTCCTCCGAAGACATCACCCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAGCTCCCCTCTTGTCTTCCAAGACGATCCTCTCCGCTTCAATTGCCCCACGCCGCAGCGTCGGGTGGGAGACCCGGGTCCTAAAACCCGTGAACTCGGCGCCTTCATCGACGAGAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCCAGAACCCCGACTTCCGCCGCTACGCCGAGTGCTCCTCCCGCCAAGACCCCCGCAATTGGACTGTTAACGGCACCGCCGCCACTCCCAGCGAGGACGACGAGTCCGACGAGGATGACGAAGATGACGATGATGAGGACGACGACGAAGGTGATACGGAAGTTGAAGGACTCGTCGGTGGTGGAAGCAAAAGGGAAATTATCGCTAACAACAACGGTGGCGGTGGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACGCTTTTGTTTCTGGGAGAGANCTGTTGGGGAAGGATGGTGGAGANATTGGGCAGTTGGTGCTTAGCAATGTGAATGGTGGTGGTGGTGAAGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTNACCGTNGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGCCGATGGGGCTTCTGGCCACAAAGTTATGGTGGATGATGGTGGTTGTGGGTTTAGTGGGAGAAAGGATGCAATGTATTCTACCGAGTCAGGGGAATCACTCAGGAATATTCTTTCAGATCCTGTTACTGGAGCTCTCATGGATGACGCAATGATATTACCGTGTGGACATTCATTTAGCGGAAGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACCTGTTCTCAACCCACAACCGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGGGAAGAAGAGTCTCAATTCTACCGGTCGCCTAAGAGAAGAAGAGAGAGATTTGATCAGGGTGGATTTGGAGACTCATCTGTTATGGAACCATCAAGGAGTAGAGGCGTTCAGTTTCCGTATGCTGTTATGGACCGAGTTGTCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACGCAATGTCTGAATGGATGGTATGTAGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCACTCGCTAAGGTTTTGGATGATTCTTCAAAGCCTTCCTCCAGCAAGATGTCACCTAGTTGGCTTTAG 1284 0.5055 MSSEDITLVPDQRIENGLSSPLVFQDDPLRFNCPTPQRRVGDPGPKTRELGAFIDEKMFIDRDRFFAAQNPDFRRYAECSSRQDPRNWTVNGTAATPSEDDESDEDDEDDDDEDDDEGDTEVEGLVGGGSKREIIANNNGGGGNLPSVANGKAHAFVSGRXLLGKDGGXIGQLVLSNVNGGGGEDHRQEGLGKSQNSVTVAETDCEEYYSHYLQGADGASGHKVMVDDGGCGFSGRKDAMYSTESGESLRNILSDPVTGALMDDAMILPCGHSFSGSGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDSSVMEPSRSRGVQFPYAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDSSKPSSSKMSPSWL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0611 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 328 IPR013083 -
Vra5g0611 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 62 427 - -
Vra5g0611 427 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Vra5g0611 427 MobiDBLite consensus disorder prediction 83 97 - -
Vra5g0611 427 MobiDBLite consensus disorder prediction 83 150 - -
Vra5g0611 427 Pfam U-box domain 253 318 IPR003613 GO:0004842|GO:0016567
Vra5g0611 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 62 427 - -
Vra5g0611 427 MobiDBLite consensus disorder prediction 27 48 - -
Vra5g0611 427 SUPERFAMILY RING/U-box 248 320 - -
Vra5g0611 427 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0611 Vra-Chr5 9076768 9084394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0611 178 427 Plant U-box Gene Family AT5G05230 55.814 3.83e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0611 - - gmx:100786717 675.626