Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0608 ATGAGGTCGACACAGATAATGGCTCTTCATCACCGCTTTTTGCTCGACACAAATTCAAGCACGCCTGCACCAAGTAACGTGAATAGGACAAGAGAGGCTTTCACAGGAGATGCAAATTTTGACACCAATATGGTGATTATCTTGGCTGCGCTGCTTTGTGCGCTTATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTCGAGACCCCAGAAGAGACTGCAGCACGTTTGGTGGCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCGGGTAGTGTTGGTATTGCAGCCACAGATTGTCCGATTTGCCTTGGGGAGTTTCTGGATGGGGAGAAAGTAAGAGTGTTGCCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAATTGCAGGCAATCTTTGCTTGAGCAACCCACCATTTCTGGAGCTGTTGCTGCAGGAAATAGTAACTATGCCGGGAATGCTTCTGCAGCAGGACAGGAACATGTGTCTTTAGCAGTGGCTGTGGAAGAGGTTGGTTAA 606 0.4686 MRSTQIMALHHRFLLDTNSSTPAPSNVNRTREAFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSVGIAATDCPICLGEFLDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLEQPTISGAVAAGNSNYAGNASAAGQEHVSLAVAVEEVG* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0608 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 167 IPR013083 -
Vra5g0608 201 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 10 177 - -
Vra5g0608 201 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Vra5g0608 201 SUPERFAMILY RING/U-box 116 165 - -
Vra5g0608 201 SMART ring_2 117 158 IPR001841 -
Vra5g0608 201 CDD RING-H2_EL5_like 116 159 - -
Vra5g0608 201 PANTHER RING-H2 FINGER PROTEIN ATL74 10 177 - -
Vra5g0608 201 SMART FANCL_C_2 113 166 - -
Vra5g0608 201 Pfam Ring finger domain 116 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0608 Vra-Chr5 8986927 8988310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0608 12 167 C3H Transcription Factor Family AT3G10910 61.818 1.11e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0608 - K19040 gmx:100787273 317.005