Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0606 ATGGCCATTGCAGCAACCTCTACCATCTCTCTTCTCTTCTTTCTTCTTAATCTATTCCTCCAAGGCACTTTTGGCGACTATGGAGGTGGATGGCAAGGTGGTCATGCCACATTCTACGGTGGGGGAGATGCCTCAGGCACAATGGGAGGGGCTTGTGGTTATGGCAATTTGTACAGCCAAGGTTATGGTACTAACACTGCAGCACTCAGCACTGCTCTATTCAACAATGGCTTGAGTTGTGGGTCTTGCTATGAGATGAAATGTGACAGTGACCCCAGATGGTGCCTCCCCGGTAGCATAATAGTCACTGCCACAAACTTTTGCCCTCCTAACTTTGCATTGGCTAATAACAATGGTGGCTGGTGCAACCCTCCTTTGCAACACTTCGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTCCCTGTTTCCTTCAGAAGAGTATCCTGTGTGAAGAAAGGAGGAATCAGGTTCACCATCAATGGCCACTCATACTTCAACTTGGTTCTGATAACAAATGTTGGTGGAGCCGGTGATGTTCATTCTGTGTCCATAAAGGGGTCTAAGACTGGTTGGCAAACCATGTCTAGAAACTGGGGGCAGAATTGGCAAAGCAACTCTTACTTAAATGGTCAAAGCCTCTCTTTTCAAGTGACTGCAAGTGATGGTAGAACTCTCACCAGCAACAACATTGTGCCTGCTAACTGGCAATTTGGTCAAACATTTGAAGGGCAACAGTTTTAG 762 0.4619 MAIAATSTISLLFFLLNLFLQGTFGDYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCDSDPRWCLPGSIIVTATNFCPPNFALANNNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTLTSNNIVPANWQFGQTFEGQQF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0606 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Vra5g0606 253 Gene3D - 160 253 IPR036749 -
Vra5g0606 253 SUPERFAMILY Barwin-like endoglucanases 14 179 IPR036908 -
Vra5g0606 253 SMART dpbb_1 66 151 IPR007112 -
Vra5g0606 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Vra5g0606 253 Gene3D - 21 156 IPR036908 -
Vra5g0606 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vra5g0606 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Vra5g0606 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Vra5g0606 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Vra5g0606 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Vra5g0606 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Vra5g0606 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Vra5g0606 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Vra5g0606 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Vra5g0606 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vra5g0606 253 PANTHER EXPANSIN-A15 5 253 IPR002963 GO:0009664
Vra5g0606 253 PANTHER EXPANSIN 5 253 - -
Vra5g0606 253 Pfam Lytic transglycolase 66 151 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0606 Vra-Chr5 8955765 8957465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0606 10 253 Expansin Gene Family AT2G40610 82.449 1.12e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0606 - K20628 gmx:547673 489.574