Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0593 ATGGAGCGAAGATCACATTCCACTGAAAGAGAAGAGGAATATGATTTGTTCCCAATATACTCCGAAAGGTCACAGCAAGACATGTCAGCCATGGTCTCTGCGCTCACACAAGTCATAGGTGGTTCCAACAATGATTCTCTTCACCACCATGAAGACCCTTTTACTTCTTCCAACAACACCTCATCCCAGAATAATAATGAACAATCACAAGTGCCACAACAAGATCAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGGAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGAGTATGGCTTGGAACTTTCGAAACTGCAGAAGCTGCGGCTCTTGCTTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTCCCTGAGAGGGTTCAAGGCACTGCCGAATTTGGTTACCTCACAAATCAACACCTTTCATCAACAACAGCTGCCAGTGGCCAAACTTCAAACCCTGTTACTCCACACTTCGCTCAAGAAACCTATTCACCAACTCACTATTACTATCCTCAACAAATCATCGGTCCAGCTGGAAGTAACTTCAATAACCAAGACACGCTCGGTTTCTATGGGGGAGATATGTTTGTTTCTTCTTCATCTTCTTCCTCAGGTCTCTCTCAACAGCAAGAACAGTTTCTGAGACTTTCGACGCAGTTTGGAGGTTCTTCTTCTCAGCCTCCTAGGAATTGGAGGGGTGATGGATATTGA 762 0.458 MERRSHSTEREEEYDLFPIYSERSQQDMSAMVSALTQVIGGSNNDSLHHHEDPFTSSNNTSSQNNNEQSQVPQQDQGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTAEFGYLTNQHLSSTTAASGQTSNPVTPHFAQETYSPTHYYYPQQIIGPAGSNFNNQDTLGFYGGDMFVSSSSSSSGLSQQQEQFLRLSTQFGGSSSQPPRNWRGDGY* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0593 253 MobiDBLite consensus disorder prediction 53 77 - -
Vra5g0593 253 MobiDBLite consensus disorder prediction 1 89 - -
Vra5g0593 253 MobiDBLite consensus disorder prediction 22 44 - -
Vra5g0593 253 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 239 - -
Vra5g0593 253 PANTHER DNA-BINDING DOMAIN 19 239 IPR044808 GO:0003700|GO:0009873
Vra5g0593 253 MobiDBLite consensus disorder prediction 216 253 - -
Vra5g0593 253 MobiDBLite consensus disorder prediction 1 18 - -
Vra5g0593 253 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Vra5g0593 253 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Vra5g0593 253 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Vra5g0593 253 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Vra5g0593 253 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Vra5g0593 253 MobiDBLite consensus disorder prediction 216 247 - -
Vra5g0593 253 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Vra5g0593 253 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Vra5g0593 253 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0593 Vra-Chr5 8249075 8251485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0593 15 155 AP2-EREBP Transcription Factor Family AT5G61890 66.897 5.55e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra5g0593 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0593 - - gmx:100799190 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3556 7 54907064 54912975 Vra5g0593 5 8249075 8251485 PCT