Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0589 ATGGCAGGTTTTTCATACCAGTACCATCCTTTTCTGGTTGATCCTGCATTCTTCCCCAGCAACATGAACACCACTTCTTCTCCTCCTCCTCCCCAGTTTCACCTCTCTCAGGAAACATCTTTTAATGTCACAAACCAGGAGACTAGCTGTGTTGACCAAAGCTCCAAGATCTCCATCAGTGACAATGAGCCTTCAGTCACAAAAAACCTTAGCCCTCAGTCCTCTGTGGTGGTGGACAAGCTTGAGACCGGTGAACAGGTCACTCAGAAGGTGAACACTCCGGCGTTCAAGAAAAGAAGAACCAGAAATGGATCTTCCTTGACTAGTAACACTCAATCCAAGGATACTGCAACAGAAGGAAGAACCAAGAAACAAAGGAAGAACAATGGTGGGGTGAAAGAAGAGGACAAGGCAAAAGAAGAGAAGAAGGAGCAGAGAAAATGCCCTGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCGGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGCTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGGTACCCTTAACGGATTCAATTGTTTTTCTGTTTTTATCAATGAAGCTTGCTTCCGTGAATCCCATGTTTTATGACTTGTCAACGGACCTAGATACCCTCTTGGTTAGACCAGATAAACTAAATAGCATGGCATCACCATCACCACTACCATGTGTGTCACATTGCAACAGCCCCAACCAAGCCACAACTTTTGCTGATACAACCACCATGACCCCCACCAACATTTTTCACAATGCCAGTGACTATCTTTTGGATAATTCAGCTTCATTTTTTCTTCAAGGCCAGAGGTCAACTATGTTCTCTGAGGAGGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1062 0.4501 MAGFSYQYHPFLVDPAFFPSNMNTTSSPPPPQFHLSQETSFNVTNQETSCVDQSSKISISDNEPSVTKNLSPQSSVVVDKLETGEQVTQKVNTPAFKKRRTRNGSSLTSNTQSKDTATEGRTKKQRKNNGGVKEEDKAKEEKKEQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEVPLTDSIVFLFLSMKLASVNPMFYDLSTDLDTLLVRPDKLNSMASPSPLPCVSHCNSPNQATTFADTTTMTPTNIFHNASDYLLDNSASFFLQGQRSTMFSEEDTGSHFWDAEDQRQKFLHPYGFSNNLCSFH* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0589 353 CDD bHLH_AtBPE_like 155 250 - -
Vra5g0589 353 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Vra5g0589 353 SMART finulus 171 221 IPR011598 GO:0046983
Vra5g0589 353 MobiDBLite consensus disorder prediction 88 116 - -
Vra5g0589 353 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 353 - -
Vra5g0589 353 MobiDBLite consensus disorder prediction 88 173 - -
Vra5g0589 353 MobiDBLite consensus disorder prediction 117 173 - -
Vra5g0589 353 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 353 IPR024097 GO:0006355
Vra5g0589 353 MobiDBLite consensus disorder prediction 44 73 - -
Vra5g0589 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Vra5g0589 353 Gene3D - 162 225 IPR036638 GO:0046983
Vra5g0589 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0589 Vra-Chr5 8000194 8003165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0589 1 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 42.444 1.26e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g0589 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0589 - - gmx:100806696 582.793