Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0579 ATGGCGTTTGAAAAGCCCTTTGAAATCATGATTGTGCCACTTCAAACCTGTACCATAATAAGAATGGTTGACTTTGTAAATCAGTTTCCACTTCTAGCAAAACCAATAGCGCAAGACAATGAAGGACAAAACTTGCAATGGCTAACTTTGTGGAAACCTCTTTGTATTTTTAATCTTTGCTCCTCAGAATCTTTGTCTTTGCACATGATGTTTCTTCTTCTTGTGAGCCTTGTTGTTTTGCAAGGCTTTGTAATACCAACCTGCTATTGCCAGATCAATACTCCTCAGAATATTGAAACATTTTATCCAATCCAAACTTCGGAACCACCCCTCCCAATCCAACCTTTTCACCCACAGGCATCACCACCATCATCAGGACCAGTGGCTGCAACAAAACCCTCTTCATCAAACAGTAAGGTAGCAACAGCAGTAGCTGCAACTGCAGCCAGCACTCTTGTTGTTTCTGGTTTGCTTTTCTTCTTTGTTAGAAGGTTCTCCAGAACAAGGAAGAGAAAGGAGAAAACAAATAACACTGCTTCTGCTGCAGAAAGGCATGTTGCACCTCAGGTGGAGGTGTTTGAGAGAATGGAAGGAAACGTGAAGGGACTGATCGTTGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAGCTTCAAGGTAAAAAGATACCACAAAAGGATTTTCAAAGGGAGGTGTTGGATAGTCCCAAAGATGAAGAAGGTGATCATGAAGGAAATCCAGGGAAGATAACTGAATCCATTCAAGAAACTCCTCTTCTTAGAGAGAAATCTTCAACTTCCCACATGAACATATTTCTTCCAGAAGAGTCCTACACAATCATGAGAATTCCACCTCCTGCTCCTCCTCCCACTGTTCCTTCGTCGGTTGGAAGCTCTCCTACACAATCTACTCCTTCCTTTACCCCTTCATCACCAAAACCAATCTCCACTTTTTTCTCATCAATTCCAAACATTACAAATTCTGCAACACCATTGGCCCCTCCAAAAGTACCTGATGAAAAGAATGAAGCTCCGATACCAGCATCAGCACCACCACCTCCTCCACCAATCATAGATGAAAAGAAGTCACCACAACCACCTCCTCCTCCTCCAATTCCAAAAAACATGAACTCAGCAGTCGCATCTCCTCCTCCTCCTCCTCCTCCAATCCCCCCTAGAAAGAGTCCAGCACCACCACCTCCTCCACCAAAGGCAAGTGGTTTGAAGTCATCATCAAAACCGCCACCTCATCCTATTGAAAGAGCAGCAGGTACCACAAGTAAGCAAGGAGACACTTCACCTGAGGTGAAACTTAAGCCACTACATTGGGATAAGGTGACTACCAACCTTGATCACTCTATGGTGTGGGACAAAATGGACCGTGGTTCTTTCAGGGTTGATGATGATCTTATGGAAGCTCTCTTTGGGGTAGTCGCCACCAACCGAAATGATAATGCCCCCAAAGAAAATAACTCAACGAGTTCTAGCAGGGATGCTTTGGCTCCATCATCAAATGCCTTCCTTCTTGACCCAAGAAAATCACAAAACATTGCTATTGTTTTGAAATCTTTGACAGTCTCTCGTAAAGATATTATTGAAGCACTCATTGATGGTCATGGCCTTAATATAGAAACCATTGAAAAGCTTGGTAGAGTAGCCCCAACAGAAGAAGAGCAATCACTTGTACTTGCATATGAAGGAGACCCTTCAAAACTTGCTGAAGCCGAAACTTTCCTCCGCCACATCCTCAAAGCTGTTCCTTCAGCTTTTAAGCGATTGAATGCCTTGCTATTCAGGTTGAATTATGACTCCGAGATTCTAGAAATCAAGGAGTTTCTGCAGACCCTTGAGATGGGGTGCAAGGAGCTTCGAAAACAAGGAATCTTTGTCAAACTTCTTGAAGCTGTGCTTAAGGCTGGAAATCGCATGAATGCAGGCACTCAGAGGGGTAATGCTCAAGCTTTCAACTTGGCTTCTCTAAGAAAGCTCTCTGATGTCAAGAGCACTGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAAGAAGTTGTTCGTTCTGAAGGAAAACGTGCTGTTCTCAACCGCAACCACAGTTTGAGTCGTAGTAGCAGCAGGAACAGTAACAAGAGTGATGACACTCAAAACTCTTCTTCTTCAAATGAACAAAGACAAAAGGAATATATAACACTAGGATTGCCAGTTGTCGGAGGGATCAGTTCTGAGTTTTCCAACGTGAGGAAAGCTGCGGTTACAGATTACAGCACTTTTGTTGGTTCAATCTCAGCACTCTCGGCCAGGATTCTTGAGATTAGAGAACTTGTTTCCCAGTGTGGAAATGACAAGGGAGGGAACTTTGTTAGAGAAATGAACCGTTTTCTTGAAAATGCTGAGGAAGAATTGAGATTAGTGAGGGAAGAGCAAACAAGGGTGATGCAAATTGTGAAAAAAACAACAGATTATTATCAAGGAGGAGCTTCAAAAGATATTGTAGAGAACCCTCTTTATCTATTTGTCATAGTAAAGGATTTTCTGGGAATGGTTGATCAAGCATGCATTGAGATTGCTCGTAACATGCAGAAGAGGAAGTCACCTAAGGTAAATTAA 2604 0.4267 MAFEKPFEIMIVPLQTCTIIRMVDFVNQFPLLAKPIAQDNEGQNLQWLTLWKPLCIFNLCSSESLSLHMMFLLLVSLVVLQGFVIPTCYCQINTPQNIETFYPIQTSEPPLPIQPFHPQASPPSSGPVAATKPSSSNSKVATAVAATAASTLVVSGLLFFFVRRFSRTRKRKEKTNNTASAAERHVAPQVEVFERMEGNVKGLIVDEDGLDVIYWRKLQGKKIPQKDFQREVLDSPKDEEGDHEGNPGKITESIQETPLLREKSSTSHMNIFLPEESYTIMRIPPPAPPPTVPSSVGSSPTQSTPSFTPSSPKPISTFFSSIPNITNSATPLAPPKVPDEKNEAPIPASAPPPPPPIIDEKKSPQPPPPPPIPKNMNSAVASPPPPPPPIPPRKSPAPPPPPPKASGLKSSSKPPPHPIERAAGTTSKQGDTSPEVKLKPLHWDKVTTNLDHSMVWDKMDRGSFRVDDDLMEALFGVVATNRNDNAPKENNSTSSSRDALAPSSNAFLLDPRKSQNIAIVLKSLTVSRKDIIEALIDGHGLNIETIEKLGRVAPTEEEQSLVLAYEGDPSKLAEAETFLRHILKAVPSAFKRLNALLFRLNYDSEILEIKEFLQTLEMGCKELRKQGIFVKLLEAVLKAGNRMNAGTQRGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRAVLNRNHSLSRSSSRNSNKSDDTQNSSSSNEQRQKEYITLGLPVVGGISSEFSNVRKAAVTDYSTFVGSISALSARILEIRELVSQCGNDKGGNFVREMNRFLENAEEELRLVREEQTRVMQIVKKTTDYYQGGASKDIVENPLYLFVIVKDFLGMVDQACIEIARNMQKRKSPKVN* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0579 867 PANTHER FORMIN-RELATED 70 865 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vra5g0579 867 MobiDBLite consensus disorder prediction 296 331 - -
Vra5g0579 867 MobiDBLite consensus disorder prediction 695 723 - -
Vra5g0579 867 PRINTS Proline rich extensin signature 281 297 - -
Vra5g0579 867 PRINTS Proline rich extensin signature 302 314 - -
Vra5g0579 867 PRINTS Proline rich extensin signature 338 354 - -
Vra5g0579 867 PRINTS Proline rich extensin signature 356 373 - -
Vra5g0579 867 PRINTS Proline rich extensin signature 380 405 - -
Vra5g0579 867 PANTHER FORMIN-LIKE PROTEIN 4 70 865 - -
Vra5g0579 867 MobiDBLite consensus disorder prediction 338 409 - -
Vra5g0579 867 MobiDBLite consensus disorder prediction 227 249 - -
Vra5g0579 867 MobiDBLite consensus disorder prediction 112 133 - -
Vra5g0579 867 MobiDBLite consensus disorder prediction 280 440 - -
Vra5g0579 867 SMART it6_source 428 862 IPR015425 -
Vra5g0579 867 MobiDBLite consensus disorder prediction 694 723 - -
Vra5g0579 867 Coils Coil 786 813 - -
Vra5g0579 867 MobiDBLite consensus disorder prediction 281 295 - -
Vra5g0579 867 MobiDBLite consensus disorder prediction 227 267 - -
Vra5g0579 867 SUPERFAMILY Formin homology 2 domain (FH2 domain) 384 862 - -
Vra5g0579 867 ProSiteProfiles Formin homology-2 (FH2) domain profile. 428 867 IPR015425 -
Vra5g0579 867 MobiDBLite consensus disorder prediction 250 267 - -
Vra5g0579 867 Pfam Formin Homology 2 Domain 432 847 IPR015425 -
Vra5g0579 867 Gene3D Formin, FH2 domain 450 866 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0579 Vra-Chr5 7585011 7588326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0579 410 862 FH2 protein (formin) Gene Family AT1G70140 57.709 2.32e-178 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0579 - - gmx:100780368 1093.18