Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0578 ATGGACACAGACGCCGTCGTTTCCTTCGATCATGTCTCGCCGGAGGATTCTCACGAGGTTCATGTTTTGGCCGTCGACGATAGCCTCGTTGATCGAAAGGTCATTGAACGCTTGCTCAAAATCTCAGCTTGTAAAGTTACAGCTGTGGACAGTGGAATCAGAGCACTGCAATTTCTGGGGTTGGACGAGCAGAGAGGGACCTCTGAATCTGATGGTTTTGTCCCGAGTTTGAAGGTGGATCTAATTATCACAGACTACTGCATGCCCGAGATGACAGGTTATGAATTGCTCAAGAAAATAAAGGAATCGTCCATGTTCAGGGAAATTCCAGTAGTGATTATGTCTTCCGAAAACGTTTTGCCTCGCATAGACAGATGCTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAACCAGTGAAATTATCTGACGTGAAACGGTTGAAGGATTACATGACAACGAGAGAGGTTAAGGTTGGAAGCCATGACAGAGGAAGCGGTGTTGATGATGTTGGTGTGGAGATTAACAACAAAAGAAAGCTGGAAGAAGAGGAAGAGACTTCTGACATGTCATCATCGCCACCGTCCATTTCTACACTTTCATCATCGCCGTCCGTTTCTTCACCATCATCTTCTCCTACATCTTCACCCACCGTTCTCGCTTCTCCAATCAGACGGCTTAAAATGAGCAGCACGGATTGA 699 0.4621 MDTDAVVSFDHVSPEDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRGTSESDGFVPSLKVDLIITDYCMPEMTGYELLKKIKESSMFREIPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTREVKVGSHDRGSGVDDVGVEINNKRKLEEEEETSDMSSSPPSISTLSSSPSVSSPSSSPTSSPTVLASPIRRLKMSSTD* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0578 232 ProSiteProfiles Response regulatory domain profile. 21 152 IPR001789 GO:0000160
Vra5g0578 232 CDD REC_typeA_ARR 22 147 - -
Vra5g0578 232 SMART REC_2 20 151 IPR001789 GO:0000160
Vra5g0578 232 MobiDBLite consensus disorder prediction 189 232 - -
Vra5g0578 232 Gene3D - 20 196 - -
Vra5g0578 232 MobiDBLite consensus disorder prediction 156 232 - -
Vra5g0578 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 11 230 - -
Vra5g0578 232 MobiDBLite consensus disorder prediction 156 186 - -
Vra5g0578 232 Pfam Response regulator receiver domain 22 144 IPR001789 GO:0000160
Vra5g0578 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 230 IPR045279 GO:0009736
Vra5g0578 232 SUPERFAMILY CheY-like 20 147 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0578 Vra-Chr5 7566240 7568017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0578 14 224 Response Regulator Gene Family AT1G59940 57.919 1.20e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra5g0578 Response_reg 6.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0578 K14492 - gmx:100779833 329.331