Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0573 ATGCTGCCGGATTCCTCCGAGCAGGACCTCGACGATCCTGACATGGAATTCGTCGAGGTTGATCCCTCTGGTCGTTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAATTGGAAGGTATTGAAGTGGCTTGGAATCAGATTAAGCTGGCGGATGTTTTGCGTAACTCTGAAGATTTCGAGCGACTTTATTCGGAGGTTCATTTACTCAAGACTTTGAAGCATAAGAATATAATTAAGTTTTATAACTCATGGATTGACTCCAAGAGCGAGAACATCAACTTCATTACTGAAATTTTCACCTCAGGAACGTTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTGTGAAGAAATGGTCTAAGCAGATTCTGGAAGGCCTTCACTATCTTCACAGTAATAATCCTCCCATCATTCATCGTGACCTGAAGTGCGATAACATTTTTGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGATTGGCGGCTATCCTCCAGCAGGCCAATTCAGCTCACAGTGTCATAGGAACTCCGGAATTCATGGCCCCAGAACTTTACGAAGAGGAATACAACGAGCTTGTTGACATCTATGCTTTTGGTATGTGCTTGCTAGAGTTGGTAACAGTTGAGTACCCGTATGTTGAATGTGCCAATGCCGCTCAAATATACAAGAAAGTTACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCCCGAAGTTAAAGCATTTATTGAAAAGTGTATTGCTCATGTATCTGAACGGTTATCTGCGAAGGACCTCTTGATGGATCCCTTCCTTCAGTCAGATTATGATAATGAAAGTGTAGGCCGATCTTCAAAAGCTCAAACCCATCATTTAGCTATTGTTGTGGATACTTCTTCTGAAGCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATAATACAATATTTTTAAAATTGAGAATTGCAGATTCCTCAGGTCATATTCGCAATATCCACTTTCCTTTTGATATCGAAGCAGACACTTCAACCTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGAACTAACTGATCAAGATGTTACAACTATTGCTAGGATGATTGACTCTGAAATTCGGTTTCACATTCCTAGTTGGAACGTCAGTGAACTTCCTGTTGACAGTTATAGTCAAGATTCAGGCTATACCTCTGAAAGTAGGCCAGAGGCCTCTCCTATGAAACACGATTCTGTTACTTCTCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGAAAGTTCTGGTCTGACTCGCCAAAGGGAGTTGGTGGAAACTCTCCATATCGTGCTGGTAGTTCAAACTTTTGTTCTGCTGCAGATGCAAACGCTGAGGATGGTAGTTTGGCCGCGAATGGTGATATTTCAGCAGATGATCGTGTTGGTGATTGTAGTGATGAGAAGGAGTGTGATGAGATTGTTGATTCCCCTTCCAGTGAAAAAAATATTAAATCAGGTGCAACCAGTGAAAAATCTGCTGTGAATGTAATATCTGCAAGCGTAAAAGATTCAGAAGCAGAATACATCAATCTCATAGCAAAAAAACTGGAGAATTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGGAAGCACAAATTAGCTGTCTCGGATCTTTTGAAGGAACTTTCTCCAGAAATTAGCCAGAAGGTTCTAAATATATGCAACCTACAGATGCCTGGCGGTGAAGTGCAGGGAGAGAGTCGCGCTTCATTCATCTAA 1812 0.4161 MLPDSSEQDLDDPDMEFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKLADVLRNSEDFERLYSEVHLLKTLKHKNIIKFYNSWIDSKSENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSKQILEGLHYLHSNNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDPEVKAFIEKCIAHVSERLSAKDLLMDPFLQSDYDNESVGRSSKAQTHHLAIVVDTSSEASREFTVEGQRRDNNTIFLKLRIADSSGHIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTTIARMIDSEIRFHIPSWNVSELPVDSYSQDSGYTSESRPEASPMKHDSVTSPGSLALEILPSGRKFWSDSPKGVGGNSPYRAGSSNFCSAADANAEDGSLAANGDISADDRVGDCSDEKECDEIVDSPSSEKNIKSGATSEKSAVNVISASVKDSEAEYINLIAKKLENLLVKQREELDELKRKHKLAVSDLLKELSPEISQKVLNICNLQMPGGEVQGESRASFI* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0573 603 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 590 - -
Vra5g0573 603 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 333 387 IPR024678 GO:0004674|GO:0005524
Vra5g0573 603 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0573 603 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0573 603 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 6 590 - -
Vra5g0573 603 MobiDBLite consensus disorder prediction 402 428 - -
Vra5g0573 603 Coils Coil 541 568 - -
Vra5g0573 603 CDD STKc_WNK 25 285 - -
Vra5g0573 603 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Vra5g0573 603 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
Vra5g0573 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vra5g0573 603 Gene3D - 329 411 - -
Vra5g0573 603 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0573 603 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0573 Vra-Chr5 7461295 7465399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0573 17 394 MAP Kinase Kinase Kinase AT3G22420 53.547 4.00e-163 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra5g0573 Pkinase 5.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0573 K08867 - gmx:100301899 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0573 5 7461295 7465399 Vra5g0573 5 7461295 7465399 ECH