Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0557 ATGGAATCCAAACCCGGTCAAAATATCAAGCTCCTCTGTAGTTACGGCGGCAAAATTCGCCCACGCACCACCGACGGCGAACTCCGTTACGTCGGAGGCCACACCAGAGTTCTCACCGTCCACCGTTCGATCTCCTTTTCAGAATTGACAGTCAAACTCACTGAGTTTTGCGGTTCGTCTGTGATCTTGAAGTGTCAATTACCCAAGGGAGACTTGGAGACCCTGATTTCCATCACCAACGACGAAGATCTCGCTAACATAATCGAAGAATACGATCGTGCCTCGTTGAAACTGGCGCATCCAATGAAGATCAGAGCCGTTCTCTTGCCGCCGAGGTCGTTGAAGAAGGTTTCGTCTACTCCGACGTTGTCCTCGGCGTCGTCCAGCGCCAGTCACTCTCCGGCCAGATCTCCTCATACTTCCGCCGAATCCCTGCCGTACGCGGCGTACCGCTACGGATGCAATTACCGGACTCCGCCGTTGCCGGCTGCGTACGCTATCGGCGTGCGTAACGGCTCGGCGAAGGCCTGCTGCTACACGCAGTTCGATGGAAACCATAGATTTTGGCGTCGTGGACCTCACTGCTACAATTACTGCCACTGA 603 0.5456 MESKPGQNIKLLCSYGGKIRPRTTDGELRYVGGHTRVLTVHRSISFSELTVKLTEFCGSSVILKCQLPKGDLETLISITNDEDLANIIEEYDRASLKLAHPMKIRAVLLPPRSLKKVSSTPTLSSASSSASHSPARSPHTSAESLPYAAYRYGCNYRTPPLPAAYAIGVRNGSAKACCYTQFDGNHRFWRRGPHCYNYCH* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0557 200 CDD PB1_UP2 12 108 - -
Vra5g0557 200 SUPERFAMILY CAD & PB1 domains 25 115 - -
Vra5g0557 200 Gene3D - 29 108 - -
Vra5g0557 200 SMART PB1_new 23 111 IPR000270 GO:0005515
Vra5g0557 200 MobiDBLite consensus disorder prediction 119 141 - -
Vra5g0557 200 PANTHER PB1 DOMAIN PROTEIN 1 200 - -
Vra5g0557 200 PANTHER OS05G0427100 PROTEIN-RELATED 1 200 - -
Vra5g0557 200 Pfam PB1 domain 25 97 IPR000270 GO:0005515
Vra5g0557 200 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0557 Vra-Chr5 7291811 7293263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0557 9 110 MAP Kinase Kinase Kinase AT1G04700 45.098 5.17e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0557 - - vra:106761207 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0557 5 7291811 7293263 Vra5g0557 5 7291811 7293263 ECH