Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0556 ATGACGACGCGTTTCAAGAAGAACAGGAAGAAGAGGGGTCACGTGAGCGCCGGTCATGGGCGCATCGGGAAGCACCGGAAGCACCCCGGAGGGCGAGGTAACGCCGGTGGCATGCACCACCACCGGATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGGAAGGTCGGAATGCGGTACTTCCACAAGCTCCGCAACAAGTTCCACTGCCCCATCCTTAACATCGACAAGCTATGGTCCCTTGTCCCTCAGCAAGTTAAGGACCAAGCCTCCAAGGAAAACAAAGCGCCTCTCGTCGACGTCACGCAGTTCGGCTACTTCAAGCTTTTGGGGAAGGGCGTTCTGCCGGAGAACCAACCCCTTGTCGTCAAGGCCAAGCTCGTCTCCAAGATCGCCGAGAAGAAAATTAAGGAGGCTGGAGGCGCTGTTGTTCTCACCGCTTGA 444 0.5676 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPILNIDKLWSLVPQQVKDQASKENKAPLVDVTQFGYFKLLGKGVLPENQPLVVKAKLVSKIAEKKIKEAGGAVVLTA* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0556 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vra5g0556 147 MobiDBLite consensus disorder prediction 1 35 - -
Vra5g0556 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Vra5g0556 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vra5g0556 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Vra5g0556 147 Gene3D - 58 147 - -
Vra5g0556 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Vra5g0556 147 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0556 Vra-Chr5 7256006 7256757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0556 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 85.714 3.07e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0556 K02900 - gmx:100798197 293.508