Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0552 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCCGAAGAAGATGAGAAGCTCTTCAATTACATAACCAGATTTGGCGTTGGCTGCTGGAGTTCGGTTCCCAAACAAGCTGGACTGCAAAGGTGTGGAAAGAGCTGCAGATTGAGATGGATAAACTACTTGAGGCCGGATTTGAAGAGAGGGATGTTCTCTCAACAAGAGGAGGATCTTATAATTAGCCTTCATGAAGTTCTAGGAAATAGGTGGGATTATATATATATATATGTAACACTTTGGAATGCTTTGGAAGGGTTTTTGAAATGGTTATTTTCCAATGACAGGTGGGCTCAAATTGCTGCTCAGTTACCAGGGAGAACTGATAATGAGATTAAGAACTTTTGGAATTCTTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCTACACACAAACCTCTTGTAAGTGCTGAAGATCACATAATAAAGGAAGAGAAGGACAGCATAGAGACACCGTCTGTGTTGTTACCAGTGTCTCAAGGGATTTTAGTCTCCTCACAGGATTCACCGCTTCTAGTGAACAATTCAAATTACTACGATGGTGTGTTCAATGTAACAGAAACTTCAAGGGATGTTTCATTGGACCCTTTGTCCTCCTACTTTGAATTCCAAATGGGTTACAATTCAAGTGTGAACCCAATGAGACAGTTTGATCAGAACCAGGTGGGAACCAATTCAAGTTATGGATTCTCCTCATTGCCGTGTCTGAATACCTCTGATCACCACGGGAACGTGTCGGTGGCAGAGTTTTCAGACAACAACTCAGCTTCTAAAATCAGTTCTTTGTTGAAGGAAAGTTCCAGCAATAGCTCTAGCATCAGTGTTTATCCAGGGGCCTTCTCATCATGGGAATGTGACAACAAAATTGATCCTTCTTTACAGTTTCAAGTCAATGTGGTAAAATCTCAAGAGTTCAAGACAAGTTCATGGCAAGAAGGCCAATTTCTGACTCAGAATTCCATAGATTTCACTACCTATCCGTTAATGTCACTGTCGGAGGATCTAACAGGAGCAAATTTTAATGTGTTCCAGCATATGTGA 1104 0.4112 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWDYIYIYVTLWNALEGFLKWLFSNDRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLVSAEDHIIKEEKDSIETPSVLLPVSQGILVSSQDSPLLVNNSNYYDGVFNVTETSRDVSLDPLSSYFEFQMGYNSSVNPMRQFDQNQVGTNSSYGFSSLPCLNTSDHHGNVSVAEFSDNNSASKISSLLKESSSNSSSISVYPGAFSSWECDNKIDPSLQFQVNVVKSQEFKTSSWQEGQFLTQNSIDFTTYPLMSLSEDLTGANFNVFQHM* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0552 367 SMART sant 66 140 IPR001005 -
Vra5g0552 367 SMART sant 13 63 IPR001005 -
Vra5g0552 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra5g0552 367 CDD SANT 17 61 IPR001005 -
Vra5g0552 367 Gene3D - 66 144 - -
Vra5g0552 367 SUPERFAMILY Homeodomain-like 16 92 IPR009057 -
Vra5g0552 367 SUPERFAMILY Homeodomain-like 111 148 IPR009057 -
Vra5g0552 367 CDD SANT 70 135 IPR001005 -
Vra5g0552 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra5g0552 367 Pfam Myb-like DNA-binding domain 113 137 IPR001005 -
Vra5g0552 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vra5g0552 367 ProSiteProfiles Myb-like domain profile. 62 138 IPR001005 -
Vra5g0552 367 PANTHER MYB DOMAIN PROTEIN 55 1 92 - -
Vra5g0552 367 PANTHER MYB DOMAIN PROTEIN 55 113 363 - -
Vra5g0552 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 142 IPR017930 -
Vra5g0552 367 PANTHER MYB TRANSCRIPTION FACTOR 1 92 - -
Vra5g0552 367 PANTHER MYB TRANSCRIPTION FACTOR 113 363 - -
Vra5g0552 367 Gene3D - 11 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0552 Vra-Chr5 7173378 7175167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0552 1 159 MYB Transcription Factor Family AT4G01680 70.440 9.08e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g0552 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0552 K09422 - gmx:100799243 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0552 5 7173378 7175167 Vra5g0552 5 7173378 7175167 ECH