Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0551 ATGGCGAGAGGAGAGAGAGCAGCAGAGACGGAGAGTGGCGCGTCGTTACCGTCGGTGGGTACGGACGCCATGAAGCGGAGAGTCACGTATTTCTACGAACCCTGCATCGGCGACTACTACTACGGTCAAGGACATCCAATGAAGCCGCACCGCATTCGCATGGCCCACAACCTCATCGTCCACTACGGTCTCCACCGCCGCATGCAGGTTAATCGTCCCTTTCCGGCGGCGGAAGCAGACATCGGCCGTTTCCACTCCGATGACTACGTCGAATTCCTGTCCTCCGTTTCGCCGCAAATCCTATCCGAGAACTCCCACTCCCACTACCGCCAGCTGAAGCGCTTCAACGTCGGGGAGGACTGCCCCGTCTTCGACGGGCTCTTCGACTTCTGCCGCGCATCCGCCGGCGGCTCCATTGGCGCCGCCGTCCGACTCAACCGCGCCGACGCCGACATCGCCATCAACTGGGCCGGCGGCCTGCACCACGCCAAGAAGGCTGAGGCCTCCGGCTTCTGCTACGTCAACGACATTGTTCTCGGCATTCTTGAACTTCTCAAAGTTCACAGGCGTGTGCTGTATATTGATATTGATGTTCACCATGGAGATGGGGTCGAGGAGGCATTTTACACTACTGATAGGGTCATGACAGTGTCATTTCACAAGTTTGGGGATTTTTTCCCAGGAACTGGGCACATTAAAGACATTGGGGTGGGTGCTGGAAAGAATTATTCTCTAAATGTCCCACTCAATGATGGATTGGATGATGAGACTTTCCGTTCTCTGTTTCGCCCTGTCATTCAAAAAGTCATGAATGTTTATCAACCGGATGCAGTTGTTCTTCAGTGTGGAGCTGACTCCTTGTCTGGTGATCGGTTGGGTTGCTTCAACTTGACTGTCAAGGGTCATGCAGATTGCCTTCGATTCCTCAGATCATTCAATGTTCCTCTAATGGTGTTGGGTGGGGGAGGATATACAGTTCGGAATGTTGCTCGTTGTTGGTGTTATGAGACCGCAGTGGCAGTAGGAGTGGAGCCTAATCCGAAGTTGCCTTACAATGAATATTATGAATATTTTGGTCCAGACTATACTCTTCATCCCGAACCATCCAACATGGAAAACTTAAACACACCCAGGGATCTGGAAAAAATTCGGAATGCATTATTGGAACAACTTGCCAGGCTTCCCCATGCACCCAGTGTGCCTTTTCAAACAACACCATCAATTATACAAGTTCCTGAAGAGGAAGAGGAGCATATGGATATAAGACCAAAACGACGCATATGGAGTGGTGAAGATTTTGATTCCGATAACGATGATGACATGGCTAGTTCAAAGAACTCTGTTTTAACTGCCCAAACGAGGTGTGGTGGAGATGTGATGGACGAAGATTAA 1392 0.5079 MARGERAAETESGASLPSVGTDAMKRRVTYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMQVNRPFPAAEADIGRFHSDDYVEFLSSVSPQILSENSHSHYRQLKRFNVGEDCPVFDGLFDFCRASAGGSIGAAVRLNRADADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGAGKNYSLNVPLNDGLDDETFRSLFRPVIQKVMNVYQPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPNPKLPYNEYYEYFGPDYTLHPEPSNMENLNTPRDLEKIRNALLEQLARLPHAPSVPFQTTPSIIQVPEEEEEHMDIRPKRRIWSGEDFDSDNDDDMASSKNSVLTAQTRCGGDVMDED* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0551 463 Pfam Histone deacetylase domain 45 338 IPR023801 -
Vra5g0551 463 CDD HDAC_classI 31 340 - -
Vra5g0551 463 PRINTS Histone deacetylase superfamily signature 158 181 IPR000286 -
Vra5g0551 463 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Vra5g0551 463 PRINTS Histone deacetylase superfamily signature 275 285 IPR000286 -
Vra5g0551 463 SUPERFAMILY Arginase/deacetylase 26 392 IPR023696 -
Vra5g0551 463 Gene3D Histone deacetylase domain 18 406 IPR037138 -
Vra5g0551 463 PIRSF HDAC_I_euk 9 459 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 PANTHER HISTONE DEACETYLASE 6 12 445 - -
Vra5g0551 463 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 PRINTS Histone deacetylase signature 115 132 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 PRINTS Histone deacetylase signature 136 156 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 PRINTS Histone deacetylase signature 177 193 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 PRINTS Histone deacetylase signature 236 249 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 PRINTS Histone deacetylase signature 253 271 IPR003084 GO:0004407|GO:0016575
Vra5g0551 463 MobiDBLite consensus disorder prediction 414 463 - -
Vra5g0551 463 MobiDBLite consensus disorder prediction 414 432 - -
Vra5g0551 463 PANTHER HISTONE DEACETYLASE 12 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0551 Vra-Chr5 7090270 7095238 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0551 K06067 - gmx:100801159 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1507 7 32396894 32398452 Vra5g0551 5 7090270 7095238 PCT