Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0549 ATGGCATCATCGAGCTCCTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCATACTTCCCACCGGAAGAGCCTCAGAAGTTCGCTAACGTGCACAAGATATTCGGTGCCAGCAATGTGACGAAGCTTCTGAACGAGCTTCTTCCTCACCAGAGGGAAGATGCAGTGAACTCCCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCAGTTTATGGATGCGTAGGAGCCATATCTTTTCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCCTACAATGACATGCCTTCACCCTCTCTTTCTGTGCCACCAGCAATGACAGCAGCAACAACAATTCAACAAATGCCCCAAAGGTCTTTCAATGCAAGGTTTGGAAATGAAGCAAGTGGGTTTTATAGGCCCTCTCCCACCATCACTTACAGCTCTTACCCTTATTCTCTTCCATGGACTGATACCCCTCCTGAAGATATCAATGATGGAGGAGGAGAAGGAGGAGGTGATTGA 573 0.4817 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDMPSPSLSVPPAMTAATTIQQMPQRSFNARFGNEASGFYRPSPTITYSSYPYSLPWTDTPPEDINDGGGEGGGD* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0549 190 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Vra5g0549 190 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vra5g0549 190 Coils Coil 89 116 - -
Vra5g0549 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 187 - -
Vra5g0549 190 PANTHER ELONGATED PETIOLULE 1 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0549 Vra-Chr5 7046133 7048829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0549 1 190 AS2 family AT5G63090 63.131 8.66e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra5g0549 LOB 9.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0549 - - gmx:100803667 304.679