Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0540 ATGGCGGATCCAACCTCATCTAACCCCGATGATAAGGGTCATCCCTCTTTGGACTCGAAAAGTGAGAAGAAGGATTATTCCACAGCAATATTAGAACGCAAGAAGTCTCCTAACCGACTTATTGTCGATGAAGCAGTTAATGATGATAATTCTGTGGTTACATTGCACCCTGAAACAATGGAGAAGCTTCAATTATTCCGGGGAGACACTGTTCTGATAAAGGGAAAGAAGCGAAGGGATACGGTTTGTATTGTTCTGGTTGATGAACATTGTGATGAACCAAAAATTAGGATGAATAAGGTTGTTCGGGCTAACCTCAGAGTGAGACTTGGAGATGTTGTCTCTGTCAATCAATGTCCTGATGTGAAGTACGGAAAACGAGTTCATATCCTTCCAATTGATGACACCATTGAGGGTGTAACTGGCAATTTGTTTGATGCATATCTGAAGCCATACTTTCTGGAGTCGTACAGGCCTGTGAGAAAAGGGGACTTGTTCCTTGTTAGGGGTGGAATGCGTAGTGTTGAATTCAAGGTAATAGAGACTGATCCTAGTGAATACTGTGTTGTGGCACCTGATACTGAGATATTCTGTGAGGGAGAACCAATCAAAAGGGAAGATGAAGAGAGACTAAATGAAGTTGGTTATGATGATGTTGGTGGTGTTAGGAAACAAATGGCTCAGATTCGTGAGCTTGTAGAACTTCCACTAAGACATCCACAGCTCTTCAAATCAATTGGTGTTAAGCCACCAAAAGGAATCTTGCTTTATGGACCACCTGGTTCTGGGAAGACTTTGATTGCAAGAGCAGTGGCTAATGAGACTGGTGCGTTCTTCTTTTTGATCAATGGACCAGAAATAATGTCAAAGCTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCTGAAAAGAATTCTCCTTCTATCATTTTCATTGATGAACTAGACTCGATTGCTCCTAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATAGTTTCACAACTTTTGACTCTTATGGATGGCCTCAAAATCCGATCACATGTTATAGTTATTGGAGCCACAAATAGACCCAATAGTATTGATCCTGCTCTCAGAAGATTTGGAAGGTTTGATAGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTTTCAGACAATGTTGATCTTGAAAAAGTTGCCAGAGACACTCATGGTTATGTTGGAGCAGATCTTGCTGCTCTTTGCACGGAGGCTGCACTACAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCGGAGGTGTTGAACTCCATGGCTGTGACTAATGAACACTTCCAAACTGCTTTAACTTCTTCCAACCCATCTGCTCTGCGTGAAACAGTAGTGGAGGTTCCAAATGTTTCCTGGGATGACATTGGAGGCTTGGAGAATGTCAAAAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCTAAAGGTGTTCTCTTTTATGGACCTCCTGGCTGTGGTAAAACCCTGCTTGCAAAAGCCATTGCTAATGAGTGCCAGGCCAACTTTATAAGTGTCAAGGGACCTGAGTTGCTCACGATGTGGTTTGGTGAAAGTGAGGCAAATGTTCGTGAGATATTTGACAAGGCCAGACAGTCAGCTCCTTGTGTGCTTTTCTTTGATGAACTTGACTCCATTGCAACCCAGCGAGGAAGTTCTGTGGGAGATGCTGGTGGTGCTGCAGATAGGGTGTTGAACCAACTGTTAACTGAAATGGATGGTATGACAGCGAAGAAAACAGTTTTCATCATTGGGGCAACAAACAGACCAGACATCATAGACCCTGCATTGCTCAGACCAGGACGTCTTGACCAATTGATTTACATCCCTTTACCGGACCAAAGTTCACGTCTTCAAATCTTCAAAGCATGCCTCAGGAAGTCACCAATCTCAAAGGATGTTGATCTTGAAGCTCTTGCCAGTTATACTCATGGATTCAGTGGTGCAGACATAACAGAAATTTGCCAACGCGCATGCAAATATGCCATTAGGGAAGACATTGAAAAGGGTATTGAGCAAGAGAGAAGAAAAAGAGAAAACCCTGAAGCCATGGAAGAAGATGACATTGTTGAGATCTCTGAGATAAAGCCTGCACACTTTGAGGAGTCTATGAAGTTTGCTCGGCGGAGTGTGAGTGATGGTGACATCAGAAAATACCAACTTTTTGCTCAGACCTTGCAACAGTCGCGAGGATTTGGATCTGAGTTTCGGTTTCCAGAACGAAACGAGAACACTGCAACAGCTGCCTCAGATGACCCTTTCTCATCTGCTGCAGCAGAGGGAGATGATGATTTGTATGGTTAG 2451 0.4329 MADPTSSNPDDKGHPSLDSKSEKKDYSTAILERKKSPNRLIVDEAVNDDNSVVTLHPETMEKLQLFRGDTVLIKGKKRRDTVCIVLVDEHCDEPKIRMNKVVRANLRVRLGDVVSVNQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKIRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLEKVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDQSSRLQIFKACLRKSPISKDVDLEALASYTHGFSGADITEICQRACKYAIREDIEKGIEQERRKRENPEAMEEDDIVEISEIKPAHFEESMKFARRSVSDGDIRKYQLFAQTLQQSRGFGSEFRFPERNENTATAASDDPFSSAAAEGDDDLYG* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0540 816 Gene3D - 664 772 - -
Vra5g0540 816 Pfam Cell division protein 48 (CDC48), domain 2 141 204 IPR004201 -
Vra5g0540 816 SUPERFAMILY ADC-like 35 119 IPR009010 -
Vra5g0540 816 Pfam ATPase family associated with various cellular activities (AAA) 527 660 IPR003959 GO:0005524|GO:0016887
Vra5g0540 816 Pfam ATPase family associated with various cellular activities (AAA) 254 383 IPR003959 GO:0005524|GO:0016887
Vra5g0540 816 CDD AAA 220 383 - -
Vra5g0540 816 Gene3D - 477 660 IPR027417 -
Vra5g0540 816 MobiDBLite consensus disorder prediction 781 816 - -
Vra5g0540 816 Pfam AAA+ lid domain 406 448 IPR041569 -
Vra5g0540 816 Pfam AAA+ lid domain 682 723 IPR041569 -
Vra5g0540 816 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Vra5g0540 816 Gene3D - 385 476 - -
Vra5g0540 816 Gene3D - 122 218 - -
Vra5g0540 816 SUPERFAMILY Cdc48 domain 2-like 121 213 IPR029067 -
Vra5g0540 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 773 IPR027417 -
Vra5g0540 816 SMART AAA_5 250 386 IPR003593 -
Vra5g0540 816 SMART AAA_5 523 662 IPR003593 -
Vra5g0540 816 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 16 790 - -
Vra5g0540 816 Pfam Cell division protein 48 (CDC48), N-terminal domain 39 120 IPR003338 -
Vra5g0540 816 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g0540 816 PANTHER AAA-FAMILY ATPASE 16 790 - -
Vra5g0540 816 CDD AAA 493 660 - -
Vra5g0540 816 Gene3D - 17 121 - -
Vra5g0540 816 ProSitePatterns AAA-protein family signature. 630 648 IPR003960 GO:0005524|GO:0016887
Vra5g0540 816 MobiDBLite consensus disorder prediction 13 30 - -
Vra5g0540 816 SMART CDC48_2_2 139 205 IPR004201 -
Vra5g0540 816 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 40 776 IPR005938 GO:0016787
Vra5g0540 816 Gene3D - 219 383 IPR027417 -
Vra5g0540 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 475 IPR027417 -
Vra5g0540 816 SMART CDC48_N_2 39 122 IPR003338 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0540 Vra-Chr5 6890392 6895018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0540 519 718 Calmodulin-binding Proteins AT3G56690 42.365 3.90e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0540 K13525 - gmx:100798680 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0540 5 6890392 6895018 Vra5g0540 5 6890392 6895018 ECH