Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0538 ATGGGTATCATCATAAAGGGAGAAATAGAGAGGGTAAATGGGAAGGAACTGAGTTACATTGAATTTGTGGATAGATATATGGAGAAGAACAAACCCGTGGTAATCACTGGGCTAATGGACCATTGGCGAGCTCACAGTGATTGGGTCACACTTCATTCCCAACCCAACTTTCAATTTTTCTCAACTCATTTTGGAGCTTCTAAAGTTCAGGAGTATCCTGAGTATGTAGCATATGAGACTCCAAGGTTCTTTTGTGATGACTGGCTCAATCTGTATCTTGACAACTTCAAAATCCATATTGATTCTGACACACAACAACCGAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATAGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCGTCAAATGTCTGTGGAAAGAAGAAATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTATATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGACGAAGTATCAAACTCGAAATTTCCTGGTTTTAGCAAGGCTATCTGGTTGGAATGCACACAAGATGCTGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATATCTATAAACCACAACTGGTTCAACGCTTATAACCTTTCCTGGGTGTGGAATTTACTTGTAAGAGACTACAATGAGGCCAAGGACTACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTATGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTCACTTTCATGTCATACTTCACCTTGGCCAACTTAGTGTTGCTTCGTTATATAAATAGAAGATATGGAAGTGCTACTGGAAGTTCATCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGACCGCTTCAGAAATGAAACACGTACGTGCTCTAGAAGGAAATCATAATTGCGTTGTGGATATTACCAAAGCATTTGAAGATCGTAGATTTTCCAAATTATTCATGCATGTAGGAAGAACATATGCCATGGTACATGAGCAATCTCACTTGGCCTCTGATTTCGAGAGCTCTACAATGAGTGATTTGATGGACTTCAACAATTCAAAATCATACACATCTCAGATCTACACACCTGAAGATCTTATTCAATTTATAGACAATGTAGTTGCAGAAGAGGAGCCATCTGTACTTCGTGTTACTTAA 1269 0.3853 MGIIIKGEIERVNGKELSYIEFVDRYMEKNKPVVITGLMDHWRAHSDWVTLHSQPNFQFFSTHFGASKVQEYPEYVAYETPRFFCDDWLNLYLDNFKIHIDSDTQQPNEEICCSDYRFVYIGVKGSWTPLHADVFRSYSWSSNVCGKKKWLFLDPSQCHLIFDRNMKNCVYNIFDEVSNSKFPGFSKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLVRDYNEAKDYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINRRYGSATGSSSTIAQHLSMNLGCLRKTASEMKHVRALEGNHNCVVDITKAFEDRRFSKLFMHVGRTYAMVHEQSHLASDFESSTMSDLMDFNNSKSYTSQIYTPEDLIQFIDNVVAEEEPSVLRVT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0538 422 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 70 - -
Vra5g0538 422 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 69 413 - -
Vra5g0538 422 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 69 413 - -
Vra5g0538 422 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 70 - -
Vra5g0538 422 ProSiteProfiles JmjC domain profile. 69 241 IPR003347 -
Vra5g0538 422 SMART cupin_9 83 241 IPR003347 -
Vra5g0538 422 Pfam JmjC domain, hydroxylase 119 224 IPR003347 -
Vra5g0538 422 Gene3D Cupin 73 225 - -
Vra5g0538 422 Gene3D Cupin 3 72 - -
Vra5g0538 422 SUPERFAMILY Clavaminate synthase-like 8 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0538 Vra-Chr5 6839436 6844114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0538 7 233 Glycosyltransferase AT1G78280 25.564 2.52e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra5g0538 JmjC 4.5e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0538 - - gmx:100803814 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0538 5 6839436 6844114 Vra5g0538 5 6839436 6844114 ECH