Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0528 ATGGCTCCACTTCCGCCGACTAAGGCTGTGTTTGGGAAGGAAGAGGATGTTTCAAAAGCACTTCGTGATAAAGTTGCTTCTCACCCTCTATTTCCTTACCTCCTCCATGCCTGCATCGATTGCCACAAGGTTGGAGCACCACAAGATATGGCAGACCTATTTGAAGGAATCAAAGAAGAGCACAGTGAATCTAAATCTTATCATAGCTTCTTGGGTGCTGATCCCGAACTTGATGATTTCATGGGAACGTTTTGCGATCTGTTGGTGAAGTACAAATCAGATCTTTCAAGACCCTTTGAAGAGGCAACCATGTTCCTCACCCACATGGAAACTCAGCTTCACTCCATCTGCAACCATCTTTCTGTCTCAGACAACACTCTTCCTCAACCTCCAGCTGGTGGATCATCTGGGAAAGATAGCATGGATGGGATTAAGAGAATTGAAAACAAGAAGACATATGAAGTTGAAGAACTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGACAAGGTTGCCCTAGCTGAATGGACTGGTTTGGAGCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAAGCATCAGAAGAAATGCAGGTTACAATTTTGGATGGACTCTATGGACCATTGCACGAGTGA 777 0.4196 MAPLPPTKAVFGKEEDVSKALRDKVASHPLFPYLLHACIDCHKVGAPQDMADLFEGIKEEHSESKSYHSFLGADPELDDFMGTFCDLLVKYKSDLSRPFEEATMFLTHMETQLHSICNHLSVSDNTLPQPPAGGSSGKDSMDGIKRIENKKTYEVEELKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWTGLEQKQVNNWFINQRKRHWKASEEMQVTILDGLYGPLHE* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0528 258 ProSiteProfiles ELK domain profile. 157 177 IPR005539 GO:0003677
Vra5g0528 258 Pfam ELK domain 157 178 IPR005539 GO:0003677
Vra5g0528 258 SMART ELK_2 157 178 IPR005539 GO:0003677
Vra5g0528 258 Pfam KNOX2 domain 72 117 IPR005541 GO:0003677|GO:0005634
Vra5g0528 258 SUPERFAMILY Homeodomain-like 179 250 IPR009057 -
Vra5g0528 258 Pfam KNOX1 domain 21 60 IPR005540 GO:0003677|GO:0005634
Vra5g0528 258 Pfam Homeobox KN domain 197 236 IPR008422 GO:0003677|GO:0006355
Vra5g0528 258 ProSiteProfiles 'Homeobox' domain profile. 177 240 IPR001356 GO:0003677
Vra5g0528 258 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 257 - -
Vra5g0528 258 SMART KNOX2_2 67 118 IPR005541 GO:0003677|GO:0005634
Vra5g0528 258 ProSitePatterns 'Homeobox' domain signature. 215 238 IPR017970 GO:0000981|GO:0006355
Vra5g0528 258 SMART HOX_1 179 244 IPR001356 GO:0003677
Vra5g0528 258 Gene3D - 175 247 - -
Vra5g0528 258 SMART KNOX1_2 19 63 IPR005540 GO:0003677|GO:0005634
Vra5g0528 258 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 13 257 - -
Vra5g0528 258 CDD homeodomain 193 239 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0528 Vra-Chr5 6624307 6632314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0528 20 254 Homeobox Transcription Factor Family AT1G23380 50.407 5.86e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra5g0528 KNOX2 6.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0528 - - gmx:102662019 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0528 5 6624307 6632314 Vra5g0528 5 6624307 6632314 ECH