Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0520 ATGCAGAGCGCGGCTTTCACTCTCTCTCCGTCGCTCTCTCTTCCTCTCCGTAACTATTCTCTAAACGCTTCTAGACCTTCTCTCCCTCTCAGACTTTTCGCCAAACACACAGAAGGCGTCAACTCCAATGGCGCCTCTTCCACTTCCTTCCTCCGTCGATCTTGGACTCTCTCTCCTTCCTCTTCCTTCAAGTTCCGCCCGCTCCCTCCCTCTCCTCCGCGCGCCGCGGAGAACGCCGTTCCCGACAGCGCGCCCGCCGAAAATTCGCTCTTCAAAACACTCGAGCTCGGCGCCTTGTTTGGCCTCTGGTACCTCTTCAACATCTACTTCAATATCTACAACAAGCAGGTGTTGAAGGCGTTTCATTATCCGGTAACTGTGACTGTTGTTCAATTTGCGGTTGGGACTGTGCTCGTGGCGATTATGTGGGGTTTGAATCTCTACAAGAGGCCGAAGATCAGTGGTGCTATGCTTGGAGCGATTTTGCCACTGGCTGCGGTGCATACTTTGGGGAATCTTTTCACTAATATGAGTCTTGGGAAGGTGGCCGTGTCTTTCACTCACACTATCAAGGCCATGGAGCCTTTCTTTTCAGTGATCCTTTCTGCCATGTTCCTTGGAGAGTTTCCTACCCCGTGGGTTGTTGGTTCCCTTGTGCCTATTGTTGGTGGAGTTGCACTGGCGTCTGTTACTGAGGCCTCTTTCAACTGGGCCGGATTTTGGAGTGCAATGGCCTCAAATGTGACAAATCAATCCCGTAATGTTCTTAGCAAAAAGGCTATGGTTAAGAAAGAGGATTCTATGGACAATATCACTCTCTTCTCTATAATAACAGTAATGTCCTTCTTCTTATTAGCACCAGTGGCTGTCTTCACGGAGGGTGTCAAATTTACCCCTGCTTACTTGCAATCTGCTGGGTTAAATGTTAAACAACTTTACGTCAGATCTCTTCTTGCCGCACTCTGTTTCCATGCGTATCAACAAGTGTCTTATATGATATTACAAAGGGTATCACCTGTTACCCACTCTGTGGGCAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATTTTCTTCCAAACACCTGTCTCACCCGTGAATGCTTTTGGTACTGCTATAGCTCTTGCTGGCGTGTTCCTCTATTCAAGGGTGAAGCGAATTAAGTCAAAGCCAAAATCAGCTTAA 1191 0.4828 MQSAAFTLSPSLSLPLRNYSLNASRPSLPLRLFAKHTEGVNSNGASSTSFLRRSWTLSPSSSFKFRPLPPSPPRAAENAVPDSAPAENSLFKTLELGALFGLWYLFNIYFNIYNKQVLKAFHYPVTVTVVQFAVGTVLVAIMWGLNLYKRPKISGAMLGAILPLAAVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEFPTPWVVGSLVPIVGGVALASVTEASFNWAGFWSAMASNVTNQSRNVLSKKAMVKKEDSMDNITLFSIITVMSFFLLAPVAVFTEGVKFTPAYLQSAGLNVKQLYVRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNAFGTAIALAGVFLYSRVKRIKSKPKSA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0520 396 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 92 369 - -
Vra5g0520 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 308 387 - -
Vra5g0520 396 PANTHER SOLUTE CARRIER FAMILY 35 92 369 - -
Vra5g0520 396 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 94 394 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vra5g0520 396 Pfam Triose-phosphate Transporter family 95 384 IPR004853 -
Vra5g0520 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 141 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0520 Vra-Chr5 6497024 6500807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0520 1 396 Antiporters AT5G33320 71.531 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0520 K15283 - gmx:100804563 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0520 5 6497024 6500807 Vra5g0520 5 6497024 6500807 ECH