Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0513 ATGGGAAAGTTGAATTCAAGTCTCATTTCTTCAGATTATCACAGTATTCTACTTTTCCTACTTCTTTTATCACAGTATTCCATTGAAGCAGCATCTTGTGCCTCGAGAGTGAAGTTCCTTCCAGGATTCGAGGGACCCCTTCCTTTTCTTCTTGAAACTGGGTATGTGGGAGTGGGAGAATCAGAAGATGTCCAAACATTTTATTACTTCATTGAGTCAGATAACAATCCCAAAGAAGATCCTCTCCTGCTTTGGCTATCCGGTGGCCATGGTTGTTCATCCCTAACTGCCTTTTTACTTGAAATAGGTCCAGTTGCAATAAAACAGGAGGAATACAATGGAGGTCCACCCAACTTGATCCTCAGGAATCAATCATGGAACAAGGTTAGTAGCATTATATATGCAGACTTGCCTTTTTCAACAGGCTTTAGTTATGCCAGAACAGAACTTGCTGTTCAAAGAAGTGATACGTTGTTTGTTGATCAAGCCCATGAATTTCTAAGGAAGTGGTTAATTGATCATCCAAATTTTTTGTCGAACGAAGTTTACATTGCTGGTAGTTCATATTCTGGCATTCCCATTCCAGCAATTGTTCAAGAAATTGCACAAGCTAACGAAGAAGGGATTCAACCAAAGATAAATATCCAGCTTGTATCAGGACTTTATAGTTCCAATATTTTGGAGCCGTTGTGTGTGTTCGATGAACTTGAATCTCCTTTGAGAAGATCCCTAATTAAGAAATTTTCTGAAGAGCATTTCTTGAAAACTGATCTCAAAGTGTCAGACGTAACATGTCCGACTTATACATCACTCCTTATGACTTATTGGGCAAATGATGATACTGTTCGAACTGCACTTAATGTCCGCAAGGGAAGTATAGGAACATGGACTCGTTGTAATCATGATAAAGATTACAAGAAGGATATTTCAAGCAGCCTTGAATATCACGCAAATCTTAGTAAAAAAGGATATCGTTCATTAATATACAATGGCGATCATGACTTGTTGGCTACTTTCTTGGCAACTGAAGAATGGATAAAATCTTTAAACTACTCAATTGTTGATGATTGGAGGCCATGGATTTCAAATGGCCAAGTTGCAGGATACACAAGGACTTACTCCAATCGGATGACATTTGCAACTGTGAAGGGTGCGGGCCACAAAGCTACGGCTGACAAATCCGGAGAATGTTATGACATGTTCAGTAAATGGATATCTAAGAAGGCTTTGTAG 1233 0.3909 MGKLNSSLISSDYHSILLFLLLLSQYSIEAASCASRVKFLPGFEGPLPFLLETGYVGVGESEDVQTFYYFIESDNNPKEDPLLLWLSGGHGCSSLTAFLLEIGPVAIKQEEYNGGPPNLILRNQSWNKVSSIIYADLPFSTGFSYARTELAVQRSDTLFVDQAHEFLRKWLIDHPNFLSNEVYIAGSSYSGIPIPAIVQEIAQANEEGIQPKINIQLVSGLYSSNILEPLCVFDELESPLRRSLIKKFSEEHFLKTDLKVSDVTCPTYTSLLMTYWANDDTVRTALNVRKGSIGTWTRCNHDKDYKKDISSSLEYHANLSKKGYRSLIYNGDHDLLATFLATEEWIKSLNYSIVDDWRPWISNGQVAGYTRTYSNRMTFATVKGAGHKATADKSGECYDMFSKWISKKAL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0513 410 SUPERFAMILY alpha/beta-Hydrolases 37 408 IPR029058 -
Vra5g0513 410 Pfam Serine carboxypeptidase 258 406 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 Pfam Serine carboxypeptidase 41 216 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 Gene3D alpha/beta hydrolase 226 410 IPR029058 -
Vra5g0513 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 134 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 145 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 PRINTS Carboxypeptidase C serine protease (S10) family signature 377 390 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 14 216 - -
Vra5g0513 410 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 218 409 - -
Vra5g0513 410 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 218 409 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 14 216 IPR001563 GO:0004185|GO:0006508
Vra5g0513 410 Gene3D alpha/beta hydrolase 30 225 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0513 Vra-Chr5 6167625 6186300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0513 31 60 Calmodulin-binding Proteins AT2G22960 70.000 1.07e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0513 K16296 - gmx:100792006 473.781